| Metagenomic analysis of microbe-mediated vitamin metabolism in the human gut microbiome P Das, P Babaei, J Nielsen BMC Genomics, 2019 | 109 | 2019 |
| Gut Microbiota Dysbiosis is Associated with Malnutrition and Reduced Plasma Amino Acid Levels: Lessons from Genome-Scale Metabolic Modeling M Kumar, B Ji, P Babaei, P Das, D Lappa, G Ramakrishnan, T E.Fox, ... Metabolic Engineering, 2018 | 95 | 2018 |
| Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism E Belda, L Voland, V Tremaroli, G Falony, S Adriouch, KE Assmann, ... Gut, 1–18, 2022 | 69 | 2022 |
| Metagenomic analysis of bile salt biotransformation in the human gut microbiome P Das, S Marsisauskas, B Ji, J Nielsen BMC Genomics, 2019 | 56 | 2019 |
| In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis P Das, B Ji, P Kovatcheva-Datchary, F Bäckhed, J Nielsen PLoS ONE, 2018 | 53 | 2018 |
| Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ... Nature microbiology 7 (12), 2128-2150, 2022 | 49 | 2022 |
| SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ... Microbiome 9 (1), 132, 2021 | 38 | 2021 |
| The future of microbiome‐based therapeutics in clinical applications A Sharma, P Das, M Buschmann, JA Gilbert Clinical Pharmacology & Therapeutics, 2019 | 36 | 2019 |
| Effects of ‘healthy’fecal microbiota transplantation against the deterioration of depression in fawn-hooded rats B Hu, P Das, X Lv, M Shi, J Aa, K Wang, L Duan, JA Gilbert, Y Nie, XL Wu Msystems 7 (3), e00218-22, 2022 | 34 | 2022 |
| Phylogeny-aware analysis of metagenome community ecology based on matched reference genomes while bypassing taxonomy Q Zhu, S Huang, A Gonzalez, I McGrath, D McDonald, N Haiminen, ... Msystems 7 (2), e00167-22, 2022 | 30 | 2022 |
| Carbohydrate active enzymes are affected by diet transition from milk to solid food in infant gut microbiota L Ye, P Das, P Li, B Ji, J Nielsen FEMS Microbiology Ecology, 2019 | 17 | 2019 |
| OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structures Q Zhu, S Huang, A Gonzalez, I McGrath, D McDonald, N Haiminen, ... bioRxiv, 2021.04. 04.438427, 2021 | 15 | 2021 |
| Conceptual strategies for characterizing interactions in microbial communities SM Kodera, P Das, JA Gilbert, HL Lutz Iscience 25 (2), 2022 | 13 | 2022 |
| Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ... Microbiome 9, 132, 2021 | 12 | 2021 |
| Phylogeny-aware analysis of metagenome community ecology based on matched reference genomes while bypassing taxonomy. mSystems 7: e0016722 Q Zhu, S Huang, A Gonzalez, I McGrath, D McDonald, N Haiminen, ... Article PubMed PubMed Central, 2022 | 11 | 2022 |
| Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ... bioRxiv, 2021.06. 04.446988, 2021 | 11 | 2021 |
| Effects of “healthy” fecal microbiota transplantation against the deterioration of depression in fawn-hooded rats. mSystems 7 (3), e21822 B Hu, P Das, X Lv, M Shi, J Aa, K Wang, X Wu | 6 | 2022 |
| Earth Microbiome Project 500 (EMP500) Consortium. Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ... Nat Microbiol 7, 2128-2150, 2022 | 5 | 2022 |
| Differential fecal microbiome dysbiosis after equivalent traumatic brain injury in aged versus young adult mice BT Davis IV, MBAR Islam, P Das, JA Gilbert, KJ Ho, SJ Schwulst Journal of experimental neurology 2 (3), 120, 2021 | 5 | 2021 |
| Microbiome establishment and maturation: early life environmental factors AL Yee, P Das, MCS Garcia, MM Buschmann, JA Gilbert The developing microbiome, 21-41, 2020 | 5 | 2020 |
Jack A GilbertUniversity of California, San DiegoVerified email at ucsd.edu
