Multidimensional optimality of microbial metabolism R Schuetz, N Zamboni, M Zampieri, M Heinemann, U Sauer Science 336 (6081), 601-604, 2012 | 516 | 2012 |
Frontiers of high-throughput metabolomics M Zampieri, K Sekar, N Zamboni, U Sauer Current opinion in chemical biology 36, 15-23, 2017 | 191 | 2017 |
Metabolic constraints on the evolution of antibiotic resistance M Zampieri, T Enke, V Chubukov, V Ricci, L Piddock, U Sauer Molecular Systems Biology 13 (3), 917, 2017 | 168 | 2017 |
Nontargeted metabolomics reveals the multilevel response to antibiotic perturbations M Zampieri, M Zimmermann, M Claassen, U Sauer Cell reports 19 (6), 1214-1228, 2017 | 166 | 2017 |
Genomewide landscape of gene–metabolome associations in Escherichia coli T Fuhrer, M Zampieri, DC Sévin, U Sauer, N Zamboni Molecular Systems Biology 13 (1), 907, 2017 | 135 | 2017 |
Metabolic profiling of cancer cells reveals genome-wide crosstalk between transcriptional regulators and metabolism K Ortmayr, S Dubuis, M Zampieri Nature communications 10 (1), 1841, 2019 | 130 | 2019 |
High-throughput metabolomic analysis predicts mode of action of uncharacterized antimicrobial compounds M Zampieri, B Szappanos, MV Buchieri, A Trauner, I Piazza, P Picotti, ... Science translational medicine 10 (429), eaal3973, 2018 | 124 | 2018 |
Regulatory mechanisms underlying coordination of amino acid and glucose catabolism in Escherichia coli M Zampieri, M Hörl, F Hotz, NF Müller, U Sauer Nature communications 10 (1), 3354, 2019 | 109 | 2019 |
Metabolomics-driven exploration of the chemical drug space to predict combination antimicrobial therapies AI Campos, M Zampieri Molecular cell 74 (6), 1291-1303. e6, 2019 | 76 | 2019 |
Dynamic phosphoproteomics reveals TORC1-dependent regulation of yeast nucleotide and amino acid biosynthesis AP Oliveira, C Ludwig, M Zampieri, H Weisser, R Aebersold, U Sauer Science signaling 8 (374), rs4-rs4, 2015 | 74 | 2015 |
Systematic analysis of transcriptional and post-transcriptional regulation of metabolism in yeast E Gonçalves, Z Raguz Nakic, M Zampieri, O Wagih, D Ochoa, U Sauer, ... PLoS computational biology 13 (1), e1005297, 2017 | 46 | 2017 |
Combining CRISPRi and metabolomics for functional annotation of compound libraries M Anglada-Girotto, G Handschin, K Ortmayr, AI Campos, L Gillet, ... Nature chemical biology 18 (5), 482-491, 2022 | 43 | 2022 |
A framework for large-scale metabolome drug profiling links coenzyme A metabolism to the toxicity of anti-cancer drug dichloroacetate S Dubuis, K Ortmayr, M Zampieri Communications biology 1 (1), 101, 2018 | 42 | 2018 |
Discerning static and causal interactions in genome-wide reverse engineering problems M Zampieri, N Soranzo, C Altafini Bioinformatics 24 (13), 1510-1515, 2008 | 42 | 2008 |
Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis O Øyås, S Borrell, A Trauner, M Zimmermann, J Feldmann, T Liphardt, ... Proceedings of the National Academy of Sciences 117 (15), 8494-8502, 2020 | 38 | 2020 |
Large-scale functional analysis of the roles of phosphorylation in yeast metabolic pathways JC Schulz, M Zampieri, S Wanka, C von Mering, U Sauer Science signaling 7 (353), rs6-rs6, 2014 | 37 | 2014 |
A computational procedure to identify significant overlap of differentially expressed and genomic imbalanced regions in cancer datasets S Bicciato, R Spinelli, M Zampieri, E Mangano, F Ferrari, L Beltrame, ... Nucleic acids research 37 (15), 5057-5070, 2009 | 36 | 2009 |
Metabolomics-driven understanding of genotype-phenotype relations in model organisms M Zampieri, U Sauer Current Opinion in Systems Biology 6, 28-36, 2017 | 30 | 2017 |
Predicting and characterizing selective multiple drug treatments for metabolicdiseases and cancer G Facchetti, M Zampieri, C Altafini BMC systems biology 6, 1-14, 2012 | 28 | 2012 |
Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis QK Beg, M Zampieri, N Klitgord, SB Collins, C Altafini, MH Serres, ... Nucleic acids research 40 (15), 7132-7149, 2012 | 25 | 2012 |