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Danny Antaki
Danny Antaki
Bioinformatics Scientist Twist Bioscience
Verified email at twistbioscience.com - Homepage
Title
Cited by
Cited by
Year
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
23452015
Contribution of copy number variants to schizophrenia from a genome-wide study of 41,321 subjects
CR Marshall, DP Howrigan, D Merico, B Thiruvahindrapuram, W Wu, ...
Nature genetics 49 (1), 27-35, 2017
948*2017
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1784, 2019
7562019
Paternally inherited cis-regulatory structural variants are associated with autism
WM Brandler, D Antaki, M Gujral, ML Kleiber, J Whitney, MS Maile, ...
Science 360 (6386), 327-331, 2018
2102018
Frequency and complexity of de novo structural mutation in autism
WM Brandler, D Antaki, M Gujral, A Noor, G Rosanio, TR Chapman, ...
The American Journal of Human Genetics 98 (4), 667-679, 2016
1122016
Human-specific tandem repeat expansion and differential gene expression during primate evolution
A Sulovari, R Li, PA Audano, D Porubsky, MR Vollger, GA Logsdon, ...
Proceedings of the National Academy of Sciences 116 (46), 23243-23253, 2019
942019
A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex
D Antaki, J Guevara, AX Maihofer, M Klein, M Gujral, J Grove, CE Carey, ...
Nature genetics 54 (9), 1284-1292, 2022
932022
Autism risk in offspring can be assessed through quantification of male sperm mosaicism
MW Breuss, D Antaki, RD George, M Kleiber, KN James, LL Ball, O Hong, ...
Nature Medicine 26 (1), 143-150, 2020
932020
Cortical organoids model early brain development disrupted by 16p11. 2 copy number variants in autism
J Urresti, P Zhang, P Moran-Losada, NK Yu, PD Negraes, CA Trujillo, ...
Molecular psychiatry 26 (12), 7560-7580, 2021
782021
Nucleocapsid protein: a desirable target for future therapies against HIV-1
M Mori, L Kovalenko, S Lyonnais, D Antaki, BE Torbett, M Botta, ...
The Future of HIV-1 Therapeutics: Resistance Is Futile?, 53-92, 2015
772015
SV2: accurate structural variation genotyping and de novo mutation detection from whole genomes
D Antaki, WM Brandler, J Sebat
Bioinformatics 34 (10), 1774-1777, 2018
552018
Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome
KA Pagel, D Antaki, AJ Lian, M Mort, DN Cooper, J Sebat, LM Iakoucheva, ...
PLoS computational biology 15 (6), e1007112, 2019
452019
Somatic mosaicism reveals clonal distributions of neocortical development
MW Breuss, X Yang, JCM Schlachetzki, D Antaki, AJ Lana, X Xu, ...
Nature 604 (7907), 689-696, 2022
40*2022
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development
C Chung, X Yang, T Bae, KI Vong, S Mittal, C Donkels, H Westley Phillips, ...
Nature genetics 55 (2), 209-220, 2023
382023
Developmental and temporal characteristics of clonal sperm mosaicism
X Yang, MW Breuss, X Xu, D Antaki, KN James, V Stanley, LL Ball, ...
Cell 184 (18), 4772-4783. e15, 2021
342021
Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability
T Bae, L Fasching, Y Wang, JH Shin, M Suvakov, Y Jang, S Norton, ...
Science 377 (6605), 511-517, 2022
332022
Mutations in spliceosomal genes PPIL1 and PRP17 cause neurodegenerative pontocerebellar hypoplasia with microcephaly
G Chai, A Webb, C Li, D Antaki, S Lee, MW Breuss, N Lang, V Stanley, ...
Neuron 109 (2), 241-256. e9, 2021
332021
Alternative genomic diagnoses for individuals with a clinical diagnosis of Dubowitz syndrome
DA Dyment, A O'Donnell‐Luria, PB Agrawal, Z Coban Akdemir, KA Aleck, ...
American Journal of Medical Genetics Part A 185 (1), 119-133, 2021
172021
SNPs, short tandem repeats, and structural variants are responsible for differential gene expression across C57BL/6 and C57BL/10 substrains
M Mortazavi, Y Ren, S Saini, D Antaki, CLS Pierre, A Williams, A Sohni, ...
Cell genomics 2 (3), 2022
14*2022
Control-independent mosaic single nucleotide variant detection with DeepMosaic
X Yang, X Xu, MW Breuss, D Antaki, LL Ball, C Chung, J Shen, C Li, ...
Nature biotechnology 41 (6), 870-877, 2023
132023
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