| Scaffold: a bioinformatic tool for validating MS/MS‐based proteomic studies BC Searle Proteomics 10 (6), 1265-1269, 2010 | 447 | 2010 |
| Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies BC Searle, M Turner, AI Nesvizhskii The Journal of Proteome Research 7 (1), 245-253, 2008 | 190 | 2008 |
| The mzIdentML data standard for mass spectrometry-based proteomics results AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ... Molecular & Cellular Proteomics 11 (7), 2012 | 178 | 2012 |
| High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results BC Searle, S Dasari, M Turner, AP Reddy, D Choi, PA Wilmarth, ... Analytical chemistry 76 (8), 2220-2230, 2004 | 164 | 2004 |
| A face in the crowd: recognizing peptides through database search JK Eng, BC Searle, KR Clauser, DL Tabb Molecular & Cellular Proteomics 10 (11), 2011 | 132 | 2011 |
| Identification of protein modifications using MS/MS de novo sequencing and the OpenSea alignment algorithm BC Searle, S Dasari, PA Wilmarth, M Turner, AP Reddy, LL David, ... Journal of proteome research 4 (2), 546-554, 2005 | 129 | 2005 |
| Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry RT Lawrence, BC Searle, A Llovet, J Villén Nature methods 13 (5), 431-434, 2016 | 59 | 2016 |
| PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data YS Ting, JD Egertson, JG Bollinger, BC Searle, SH Payne, WS Noble, ... Nature methods 14 (9), 903, 2017 | 56 | 2017 |
| The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics LK Pino, BC Searle, JG Bollinger, B Nunn, B MacLean, MJ MacCoss Mass spectrometry reviews, 2017 | 42 | 2017 |
| Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry BC Searle, LK Pino, JD Egertson, YS Ting, RT Lawrence, BX MacLean, ... Nature communications 9 (1), 1-12, 2018 | 35* | 2018 |
| Interlaboratory studies and initiatives developing standards for proteomics AR Ivanov, CM Colangelo, CP Dufresne, DB Friedman, KS Lilley, ... Proteomics 13 (6), 904-909, 2013 | 25 | 2013 |
| Using data independent acquisition (DIA) to model high-responding peptides for targeted proteomics experiments BC Searle, JD Egertson, JG Bollinger, AB Stergachis, MJ MacCoss Molecular & Cellular Proteomics 14 (9), 2331-2340, 2015 | 22 | 2015 |
| A standardized framing for reporting protein identifications in mzIdentML 1.2 SL Seymour, T Farrah, PA Binz, RJ Chalkley, JS Cottrell, BC Searle, ... Proteomics 14 (21-22), 2389-2399, 2014 | 19 | 2014 |
| Identification of respiratory vagal feedback in awake normal subjects using pseudorandom unloading BF BuSha, BG Judd, HL Manning, PM Simon, BC Searle, ... Journal of Applied Physiology 90 (6), 2330-2340, 2001 | 18 | 2001 |
| Calibration using a single-point external reference material harmonizes quantitative mass spectrometry proteomics data between platforms and laboratories LK Pino, BC Searle, EL Huang, WS Noble, AN Hoofnagle, MJ MacCoss Analytical chemistry 90 (21), 13112-13117, 2018 | 9 | 2018 |
| P17-M Improving Sensitivity by Combining Results from Multiple MS/MS Search Methodologies with the Scaffold Computer Algorithm BC Searle, M Turner Journal of Biomolecular Techniques: JBT 18 (1), 6, 2007 | 9* | 2007 |
| Bioinformatic Evaluation of Datasets Derived from the ABRF sPRG Proteomics Standard WS Lane, AI Nesvizhskii, B Searle, DL Tabb, JA Kowalak, SL Seymour ABRF, 2007 | 8 | 2007 |
| Methods and systems for identification of macromolecules S Nagalla, B Searle, S Dasari, M Turner US Patent App. 10/789,424, 2005 | 7 | 2005 |
| Thesaurus: quantifying phosphopeptide positional isomers BC Searle, RT Lawrence, MJ MacCoss, J Villén Nature methods 16 (8), 703-706, 2019 | 6* | 2019 |
| Detecting sources of transcriptional heterogeneity in large-scale RNA-seq data sets BC Searle, RM Gittelman, O Manor, JM Akey Genetics 204 (4), 1391-1396, 2016 | 6 | 2016 |
Michael MacCossProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
