| LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma J Li, Z Chen, L Tian, C Zhou, MY He, Y Gao, S Wang, F Zhou, S Shi, ... Gut 63 (11), 1700-1710, 2014 | 386 | 2014 |
| Analysis of error profiles in deep next-generation sequencing data X Ma, Y Shao, L Tian, DA Flasch, HL Mulder, MN Edmonson, Y Liu, ... Genome biology 20, 1-15, 2019 | 261 | 2019 |
| Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia B Li, SW Brady, X Ma, S Shen, Y Zhang, Y Li, K Szlachta, L Dong, Y Liu, ... Blood, The Journal of the American Society of Hematology 135 (1), 41-55, 2020 | 216 | 2020 |
| St. Jude Cloud: a pediatric cancer genomic data-sharing ecosystem C McLeod, AM Gout, X Zhou, A Thrasher, D Rahbarinia, SW Brady, ... Cancer discovery 11 (5), 1082-1099, 2021 | 121 | 2021 |
| Acute depletion of CTCF directly affects MYC regulation through loss of enhancer–promoter looping J Hyle, Y Zhang, S Wright, B Xu, Y Shao, J Easton, L Tian, R Feng, P Xu, ... Nucleic acids research 47 (13), 6699-6713, 2019 | 113 | 2019 |
| CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data L Tian, Y Li, MN Edmonson, X Zhou, S Newman, C McLeod, A Thrasher, ... Genome biology 21, 1-18, 2020 | 83 | 2020 |
| MiR‐23a in amplified 19p13. 13 loci targets metallothionein 2A and promotes growth in gastric cancer cells J An, Y Pan, Z Yan, W Li, J Cui, J Yuan, L Tian, R Xing, Y Lu Journal of cellular biochemistry 114 (9), 2160-2169, 2013 | 67 | 2013 |
| Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation Y Cao, L Song, Z Miao, Y Hu, L Tian, T Jiang Bioinformatics 27 (6), 785-790, 2011 | 64 | 2011 |
| Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X Y Liu, C Li, S Shen, X Chen, K Szlachta, MN Edmonson, Y Shao, X Ma, ... Nature genetics 52 (8), 811-818, 2020 | 52 | 2020 |
| MiRNA expression profile reveals a prognostic signature for esophageal squamous cell carcinoma Z Chen, J Li, L Tian, C Zhou, Y Gao, F Zhou, S Shi, X Feng, N Sun, R Yao, ... Cancer letters 350 (1-2), 34-42, 2014 | 51 | 2014 |
| Integrated Genomic Analysis Identifies UBTF Tandem Duplications as a Recurrent Lesion in Pediatric Acute Myeloid Leukemia M Umeda, J Ma, BJ Huang, K Hagiwara, T Westover, S Abdelhamed, ... Blood cancer discovery 3 (3), 194-207, 2022 | 49 | 2022 |
| Transcriptome profiling of esophageal squamous cell carcinoma reveals a long noncoding RNA acting as a tumor suppressor G Wei, H Luo, Y Sun, J Li, L Tian, W Liu, L Liu, J Luo, J He, R Chen Oncotarget 6 (19), 17065, 2015 | 45 | 2015 |
| Exploration of coding and non-coding variants in cancer using GenomePaint X Zhou, J Wang, J Patel, M Valentine, Y Shao, S Newman, E Sioson, ... Cancer Cell 39 (1), 83-95. e4, 2021 | 25 | 2021 |
| Long-read sequencing unveils IGH-DUX4 translocation into the silenced IGH allele in B-cell acute lymphoblastic leukemia L Tian, Y Shao, S Nance, J Dang, B Xu, X Ma, Y Li, B Ju, L Dong, ... Nature communications 10 (1), 2789, 2019 | 17 | 2019 |
| Incorporation of local structural preference potential improves fold recognition Y Hu, X Dong, A Wu, Y Cao, L Tian, T Jiang PLoS One 6 (2), e17215, 2011 | 17 | 2011 |
| Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL) TI Shaw, L Dong, L Tian, C Qian, Y Liu, B Ju, A High, K Kavdia, ... Scientific Reports 11 (1), 5154, 2021 | 13 | 2021 |
| A point mutation in the DNA-binding domain of HPV-2 E2 protein increases its DNA-binding capacity and reverses its transcriptional regulatory activity on the viral early promoter C Gao, MM Pan, YJ Lei, LQ Tian, HY Jiang, XL Li, Q Shi, C Tian, YK Yuan, ... BMC Molecular Biology 13, 1-13, 2012 | 9 | 2012 |
| Etiology of oncogenic fusions in 5,190 childhood cancers and its clinical and therapeutic implication Y Liu, J Klein, R Bajpai, L Dong, Q Tran, P Kolekar, JL Smith, RE Ries, ... Nature communications 14 (1), 1739, 2023 | 7 | 2023 |
| NCACO-score: An effective main-chain dependent scoring function for structure modeling L Tian, A Wu, Y Cao, X Dong, Y Hu, T Jiang BMC bioinformatics 12, 1-12, 2011 | 7 | 2011 |
| The landscape of coding RNA editing events in pediatric cancer J Wen, M Rusch, SW Brady, Y Shao, MN Edmonson, TI Shaw, BB Powers, ... BMC cancer 21, 1-14, 2021 | 6 | 2021 |
