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Fatemeh Zare-Mirakabad
Fatemeh Zare-Mirakabad
Assistant Professor of Computer Science , Amirkabir University of Technology
Verified email at aut.ac.ir - Homepage
Title
Cited by
Cited by
Year
WCOACH: Protein complex prediction in weighted PPI networks
M Kouhsar, F Zare-Mirakabad, Y Jamali
Genes & genetic systems, 15-00032, 2016
282016
Genetic algorithm for dyad pattern finding in DNA sequences
F Zare-Mirakabad, H Ahrabian, M Sadeghi, S Hashemifar, ...
Genes & genetic systems 84 (1), 81-93, 2009
282009
Transcription factor binding sites prediction based on modified nucleosomes
M Talebzadeh, F Zare-Mirakabad
PloS one 9 (2), e89226, 2014
192014
New scoring schema for finding motifs in DNA Sequences
F Zare-Mirakabad, H Ahrabian, M Sadeghi, A Nowzari-Dalini, B Goliaei
Bmc Bioinformatics 10 (1), 1-21, 2009
192009
The assessment of efficient representation of drug features using deep learning for drug repositioning
M Moridi, M Ghadirinia, A Sharifi-Zarchi, F Zare-Mirakabad
BMC bioinformatics 20 (1), 1-11, 2019
162019
RNA-RNA interaction prediction using genetic algorithm
S Montaseri, F Zare-Mirakabad, N Moghadam-Charkari
Algorithms for Molecular Biology 9 (1), 1-7, 2014
112014
Evaluating the accuracy of protein design using native secondary sub-structures
M Movahedi, F Zare-Mirakabad, SS Arab
BMC bioinformatics 17 (1), 1-11, 2016
82016
Evolutionary algorithm for RNA secondary structure prediction based on simulated SHAPE data
S Montaseri, M Ganjtabesh, F Zare-Mirakabad
PloS one 11 (11), e0166965, 2016
82016
Inverse RNA folding solution based on multi-objective genetic algorithm and Gibbs sampling method
M Ganjtabesh, F Zare-Mirakabad, A Nowzari-Dalini
EXCLI journal 12, 546, 2013
72013
PSOMF: An algorithm for pattern discovery using PSO
F Zare-Mirakabad, H Ahrabian, M Sadeghi, J Mohammadzadeh, ...
Proceedings of the Third IAPR International Conferences on Pattern …, 2008
72008
RNA secondary structure prediction based on SHAPE data in helix regions
M Lotfi, F Zare-Mirakabad, S Montaseri
Journal of theoretical biology 380, 178-182, 2015
62015
RNAComp: A new method for RNA secondary structure alignment
F Zare-Mirakabad, M Sadeghi, H Ahrabian, A Nowzari-Dalini
Match 61 (3), 789, 2009
42009
EIA-CNDP: an exact iterative algorithm for critical node detection problem
J Rezaei, F Zare-Mirakabad, SA MirHassani, SA Marashi
Computers & Operations Research 127, 105138, 2021
32021
The outward shift of clarithromycin binding to the ribosome in mutant Helicobacter pylori strains
N Salehi, B Attaran, F Zare‐Mirakabad, B Ghadiri, M Esmaeili, ...
Helicobacter 25 (6), e12731, 2020
32020
Draft genome sequence of Pseudomonas aeruginosa strain LMG 1272, an atypical white line reaction producer
F Salari, F Zare-Mirakabad, MH Alavi, L Girard, M Ghafari, R De Mot, ...
Microbiology resource announcements 9 (7), e01363-19, 2020
32020
The effect of stochasticity on repair of DNA double strand breaks throughout non-homologous end joining pathway
FS Mohseni-Salehi, F Zare-Mirakabad, S Ghafouri-Fard, M Sadeghi
Mathematical Medicine and Biology: A Journal of the IMA 35 (4), 517-539, 2018
32018
Assessing the impact of exact reads on reducing the error rate of read mapping
F Salari, F Zare-Mirakabad, M Sadeghi, H Rokni-Zadeh
BMC bioinformatics 19 (1), 1-15, 2018
32018
Evaluating the quality of SHAPE data simulated by k-mers for RNA structure prediction
S Montaseri, F Zare-Mirakabad, M Ganjtabesh
Journal of Bioinformatics and Computational Biology 15 (06), 1750023, 2017
32017
A heuristic approach to RNA–RNA interaction prediction
S Montaseri, N Moghadam-Charkari, F Zare-Mirakabad
Journal of theoretical biology 300, 206-211, 2012
32012
A stochastic model of DNA double-strand breaks repair throughout the cell cycle
FS Mohseni-Salehi, F Zare-Mirakabad, M Sadeghi, S Ghafouri-Fard
Bulletin of Mathematical Biology 82 (1), 1-36, 2020
22020
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