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Marta Andreia da Silva Perez
Marta Andreia da Silva Perez
Postdoctoral Researcher, Ludwig Center Cancer Research - Lausanne Branch
Verified email at epfl.ch
Title
Cited by
Cited by
Year
Infrared Spectroscopy of Mobility-Selected H+-Gly-Pro-Gly-Gly (GPGG)
A Masson, MZ Kamrath, MAS Perez, MS Glover, U Rothlisberger, ...
Journal of the American Society for Mass Spectrometry 26 (9), 1444-1454, 2015
762015
Computational alanine scanning mutagenesis: MM-PBSA vs TI
SA Martins, MAS Perez, IS Moreira, SF Sousa, MJ Ramos, PA Fernandes
Journal of chemical theory and computation 9 (3), 1311-1319, 2013
752013
Accuracy of density functionals in the prediction of electronic proton affinities of amino acid side chains
NF Bras, MAS Perez, PA Fernandes, PJ Silva, MJ Ramos
Journal of Chemical Theory and Computation 7 (12), 3898-3908, 2011
492011
Establishing the catalytic mechanism of human pancreatic α-amylase with QM/MM methods
GP Pinto, NF Bras, MAS Perez, PA Fernandes, N Russo, MJ Ramos, ...
Journal of chemical theory and computation 11 (6), 2508-2516, 2015
432015
Substrate recognition in HIV-1 protease: a computational study
MAS Perez, PA Fernandes, MJ Ramos
The Journal of Physical Chemistry B 114 (7), 2525-2532, 2010
382010
Genetic algorithm based design and experimental characterization of a highly thermostable metalloprotein
E Bozkurt, MAS Perez, R Hovius, NJ Browning, U Rothlisberger
Journal of the American Chemical Society 140 (13), 4517-4521, 2018
232018
Drug design: new inhibitors for HIV-1 protease based on Nelfinavir as lead
MAS Perez, PA Fernandes, MJ Ramos
Journal of Molecular Graphics and Modelling 26 (3), 634-642, 2007
232007
Ribonucleotide reductase: a mechanistic portrait of substrate analogues inhibitors
MAS Perez, N Cerqueira, PA Fernandes, MJ Ramos
Current medicinal chemistry 17 (26), 2854-2872, 2010
192010
Understanding the Mechanism for Ribonucleotide Reductase Inactivation by 2′-Deoxy-2′-methylenecytidine-5′-diphosphate
MAS Perez, PA Fernandes, MJ Ramos
Journal of Chemical Theory and Computation 6 (9), 2770-2781, 2010
92010
Genetic‐Algorithm‐Based Optimization of a Peptidic Scaffold for Sequestration and Hydration of CO2
E Brunk, MAS Perez, P Athri, U Rothlisberger
ChemPhysChem 17 (23), 3831-3835, 2016
82016
Cryogenic spectroscopy and quantum molecular dynamics determine the structure of cyclic intermediates involved in peptide sequence scrambling
O Aseev, MAS Perez, U Rothlisberger, TR Rizzo
The journal of physical chemistry letters 6 (13), 2524-2529, 2015
82015
Detection of farnesyltransferase interface hot spots through computational alanine scanning mutagenesis
MAS Perez, SF Sousa, EFT Oliveira, PA Fernandes, MJ Ramos
The Journal of Physical Chemistry B 115 (51), 15339-15354, 2011
72011
Improving the study of proton transfers between amino acid side chains in solution: choosing appropriate DFT functionals and avoiding hidden pitfalls
PJ Silva, MAS Perez, NF Brás, PA Fernandes, MJ Ramos
Theoretical Chemistry Accounts 131, 1-6, 2012
62012
The extracellular subunit interface of the 5-HT3 receptors: a computational alanine scanning mutagenesis study
F De Rienzo, AJ Moura Barbosa, MAS Perez, PA Fernandes, MJ Ramos, ...
Journal of Biomolecular Structure and Dynamics 30 (3), 280-298, 2012
52012
Lessons from nature: computational design of biomimetic compounds and processes
E Bozkurt, N Ashari, N Browning, E Brunk, P Campomanesa, MAS Perez, ...
Chimia 68 (9), 642-642, 2014
42014
Lead Optimisation: Improving the Affinity of the Antiretrovirals Nelfinavir and Amprenavir for HIV-1 Protease
PA Fernandes, M Araújo, AJM Barbosa, CN Alves, ZQ Ferreira, ...
Letters in Drug Design & Discovery 3 (6), 383-389, 2006
12006
Computational proteomics: from methodological developments to biological applications
IS Moreira, NF Bras, ATP Carvalho, NM Cerqueira, DF Dourado, ...
Imprensa da Universidade de Coimbra, 2011
2011
Recent Advances on Computational Proteomics
SF Sousa, NM Cerqueira, MAS Perez, IS Moreira, AJM Ribeiro, ...
International Journal of Biomedical and Biological Engineering 3 (8), 404-414, 2009
2009
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Articles 1–18