Nanjiang Shu
Nanjiang Shu
Department of Biochemistry and Biophysics, Stockholm University
Verified email at - Homepage
Cited by
Cited by
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
KD Tsirigos, C Peters, N Shu, L Käll, A Elofsson
Nucleic acids research 43 (W1), W401-W407, 2015
Prediction of zinc-binding sites in proteins from sequence
N Shu, T Zhou, S Hovmöller
Bioinformatics 24 (6), 775-782, 2008
ProQ3D: improved model quality assessments using deep learning
K Uziela, D Menendez Hurtado, N Shu, B Wallner, A Elofsson
Bioinformatics 33 (10), 1578-1580, 2017
ProQ3: Improved model quality assessments using Rosetta energy terms
K Uziela, N Shu, B Wallner, A Elofsson
Scientific Reports 6 (33509), 2016
Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins
S Hayat, C Peters, N Shu, KD Tsirigos, A Elofsson
Bioinformatics 32 (10), 1571-1573, 2016
Improved topology prediction using the terminal hydrophobic helices rule
C Peters, KD Tsirigos, N Shu, A Elofsson
Bioinformatics 32 (8), 1158-1162, 2016
A novel method for accurate one-dimensional protein structure prediction based on fragment matching
T Zhou, N Shu, S Hovmöller
Bioinformatics 26 (4), 470-477, 2010
The TOPCONS web server for combined membrane protein topology and signal peptide prediction
KD Tsirigos, C Peters, N Shu, L Käll, A Elofsson
Nucleic Acids Res 43, W401-W407, 2015
SubCons: a new ensemble method for improved human subcellular localization predictions
M Salvatore, P Warholm, N Shu, W Basile, A Elofsson
Bioinformatics 33 (16), 2464-2470, 2017
A novel counter sheet-flow sandwich cell culture device for mammalian cell growth in space
S Sun, Y Gao, N Shu, Z Tang, Z Tao, M Long
Microgravity Science and Technology 20 (2), 115-120, 2008
Improved protein model quality assessments by changing the target function
K Uziela, D Menéndez Hurtado, N Shu, B Wallner, A Elofsson
Proteins: Structure, Function, and Bioinformatics 86 (6), 654-663, 2018
Topology of membrane proteins—predictions, limitations and variations
KD Tsirigos, S Govindarajan, C Bassot, Å Västermark, J Lamb, N Shu, ...
Current opinion in structural biology 50, 9-17, 2018
The SubCons webserver: A user friendly web interface for state‐of‐the‐art subcellular localization prediction
M Salvatore, N Shu, A Elofsson
Protein Science 27 (1), 195-201, 2018
KalignP: Improved multiple sequence alignments using position specific gap penalties in Kalign2
N Shu, A Elofsson
Bioinformatics 27 (12), 1702-1703, 2011
Large tilts in transmembrane helices can be induced during tertiary structure formation
M Virkki, C Boekel, K Illergård, C Peters, N Shu, KD Tsirigos, A Elofsson, ...
Journal of molecular biology 426 (13), 2529-2538, 2014
Describing and comparing protein structures using shape strings
N Shu, S Hovmoller, T Zhou
Current Protein and Peptide Science 9 (4), 310-324, 2008
The evolutionary history of topological variations in the CPA/AT superfamily
S Govindarajan, C Bassot, J Lamb, N Shu, Y Huang, A Elofsson
bioRxiv, 2020
PRODRES: Fast protein searches using a protein domain-reduced database
S Pascarelli, K Tsirigos, N Shu, C Peters, A Elofsson
How to select the best protein model using ProQ2?
K Uziela, N Shu, B Wallner, A Elofsson
F1000Research 5, 2014
A Segment Matching Method for Remote Homology Detection
N Shu, T Zhou, S Hovmölle
2010 4th International Conference on Bioinformatics and Biomedical …, 2010
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