| Automatic method for identifying reaction coordinates in complex systems A Ma, AR Dinner The Journal of Physical Chemistry B 109 (14), 6769-6779, 2005 | 419 | 2005 |
| Drosophila katanin is a microtubule depolymerase that regulates cortical-microtubule plus-end interactions and cell migration D Zhang, KD Grode, SF Stewman, JD Diaz-Valencia, E Liebling, U Rath, ... Nature cell biology 13 (4), 361-369, 2011 | 144 | 2011 |
| The actin-binding ERM protein Moesin binds to and stabilizes microtubules at the cell cortex S Solinet, K Mahmud, SF Stewman, K Ben El Kadhi, B Decelle, L Talje, ... Journal of Cell Biology 202 (2), 251-260, 2013 | 105 | 2013 |
| Fifth-order Raman spectrum of an atomic liquid: Simulation and instantaneous-normal-mode calculation A Ma, RM Stratt Physical Review Letters 85 (5), 1004, 2000 | 101 | 2000 |
| Human Fidgetin is a microtubule severing the enzyme and minus-end depolymerase that regulates mitosis S Mukherjee, JDD Valencia, S Stewman, J Metz, S Monnier, U Rath, ... Cell cycle 11 (12), 2359-2366, 2012 | 96 | 2012 |
| A two-step nucleotide-flipping mechanism enables kinetic discrimination of DNA lesions by AGT J Hu, A Ma, AR Dinner Proceedings of the National Academy of Sciences 105 (12), 4615-4620, 2008 | 90 | 2008 |
| Monte Carlo simulations of biomolecules: The MC module in CHARMM J Hu, A Ma, AR Dinner Journal of computational chemistry 27 (2), 203-216, 2006 | 76 | 2006 |
| Recent developments in methods for identifying reaction coordinates W Li, A Ma Molecular simulation 40 (10-11), 784-793, 2014 | 61 | 2014 |
| A new Augmin subunit, Msd1, demonstrates the importance of mitotic spindle-templated microtubule nucleation in the absence of functioning centrosomes A Wainman, DW Buster, T Duncan, J Metz, A Ma, D Sharp, JG Wakefield Genes & development 23 (16), 1876-1881, 2009 | 59 | 2009 |
| The molecular origins of the two-dimensional Raman spectrum of an atomic liquid. II. Instantaneous-normal-mode theory A Ma, RM Stratt The Journal of chemical physics 116 (12), 4972-4984, 2002 | 48 | 2002 |
| Bias annealing: A method for obtaining transition paths de novo J Hu, A Ma, AR Dinner The Journal of chemical physics 125 (11), 2006 | 47 | 2006 |
| Dynamic coupling between coordinates in a model for biomolecular isomerization A Ma, A Nag, AR Dinner The Journal of chemical physics 124 (14), 2006 | 47 | 2006 |
| The molecular origins of the two-dimensional Raman spectrum of an atomic liquid. I. Molecular dynamics simulation A Ma, RM Stratt The Journal of chemical physics 116 (12), 4962-4971, 2002 | 47 | 2002 |
| The microtubule lattice and plus-end association of Drosophila Mini spindles is spatially regulated to fine-tune microtubule dynamics JD Currie, S Stewman, G Schimizzi, KC Slep, A Ma, SL Rogers Molecular biology of the cell 22 (22), 4343-4361, 2011 | 45 | 2011 |
| Motor domain phosphorylation and regulation of the Drosophila kinesin 13, KLP10A V Mennella, DY Tan, DW Buster, AB Asenjo, U Rath, A Ma, HJ Sosa, ... Journal of cell biology 186 (4), 481-490, 2009 | 42 | 2009 |
| Reaction mechanism and reaction coordinates from the viewpoint of energy flow W Li, A Ma The Journal of chemical physics 144 (11), 2016 | 40 | 2016 |
| A benchmark for reaction coordinates in the transition path ensemble W Li, A Ma The Journal of chemical physics 144 (13), 2016 | 20 | 2016 |
| Implications of alternative substrate binding modes for catalysis by uracil-DNA glycosylase: an apparent discrepancy resolved A Ma, J Hu, M Karplus, AR Dinner Biochemistry 45 (46), 13687-13696, 2006 | 17 | 2006 |
| A rigorous method for identifying a one-dimensional reaction coordinate in complex molecules S Wu, H Li, A Ma Journal of Chemical Theory and Computation 18 (5), 2836-2844, 2022 | 16 | 2022 |
| Kinetic energy flows in activated dynamics of biomolecules H Li, A Ma The Journal of Chemical Physics 153 (9), 2020 | 16 | 2020 |
