Nicholas E Banovich
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SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
W Sungnak, N Huang, C Bécavin, M Berg, R Queen, M Litvinukova, ...
Nature medicine 26 (5), 681-687, 2020
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ...
Cell 181 (5), 1016-1035. e19, 2020
Identification of genetic variants that affect histone modifications in human cells
G McVicker, B van de Geijn, JF Degner, CE Cain, NE Banovich, A Raj, ...
Science 342 (6159), 747-749, 2013
Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels
NE Banovich, X Lan, G McVicker, B Van de Geijn, JF Degner, JD Blischak, ...
PLoS genetics 10 (9), e1004663, 2014
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ...
Nature medicine 27 (3), 546-559, 2021
Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis
AC Habermann, AJ Gutierrez, LT Bui, SL Yahn, NI Winters, CL Calvi, ...
Science advances 6 (28), eaba1972, 2020
Genetic variation, not cell type of origin, underlies the majority of identifiable regulatory differences in iPSCs
CK Burrows, NE Banovich, BJ Pavlovic, K Patterson, I Gallego Romero, ...
PLoS genetics 12 (1), e1005793, 2016
A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics
IG Romero, BJ Pavlovic, I Hernando-Herraez, X Zhou, MC Ward, ...
Elife 4, e07103, 2015
Impact of regulatory variation across human iPSCs and differentiated cells
NE Banovich, YI Li, A Raj, MC Ward, P Greenside, D Calderon, PY Tung, ...
Genome research 28 (1), 122-131, 2018
Persistence of a regeneration-associated, transitional alveolar epithelial cell state in pulmonary fibrosis
Y Kobayashi, A Tata, A Konkimalla, H Katsura, RF Lee, J Ou, ...
Nature cell biology 22 (8), 934-946, 2020
Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19
JP Bernardes, N Mishra, F Tran, T Bahmer, L Best, JI Blase, D Bordoni, ...
Immunity 53 (6), 1296-1314. e9, 2020
Age-determined expression of priming protease TMPRSS2 and localization of SARS-CoV-2 in lung epithelium
BA Schuler, AC Habermann, EJ Plosa, CJ Taylor, C Jetter, NM Negretti, ...
The Journal of clinical investigation 131 (1), 2021
A comparison of gene expression and DNA methylation patterns across tissues and species
LE Blake, J Roux, I Hernando-Herraez, NE Banovich, RG Perez, CJ Hsiao, ...
Genome research 30 (2), 250-262, 2020
Imputation of single-cell gene expression with an autoencoder neural network
MB Badsha, R Li, B Liu, YI Li, M Xian, NE Banovich, AQ Fu
Quantitative Biology 8 (1), 78-94, 2020
Facing the facts: The Runx2 gene is associated with variation in facial morphology in primates
TB Ritzman, N Banovich, KP Buss, J Guida, MA Rubel, J Pinney, B Khang, ...
Journal of human evolution 111, 139-151, 2017
Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity
LT Bui, NI Winters, MI Chung, C Joseph, AJ Gutierrez, AC Habermann, ...
bioRxiv, 2021
Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago
HM Natri, KS Bobowik, P Kusuma, C Crenna Darusallam, GS Jacobs, ...
PLoS genetics 16 (5), e1008749, 2020
Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes
MC Ward, NE Banovich, A Sarkar, M Stephens, Y Gilad
Elife 10, 2021
Integrated single cell atlas of endothelial cells of the human lung
JC Schupp, TS Adams, C Cosme, MSB Raredon, N Omote, S Poli, ...
bioRxiv, 2020
RAAS blockade, kidney disease, and expression of ACE2, the entry receptor for SARS-CoV-2, in kidney epithelial and endothelial cells
A Subramanian, K Vernon, M Slyper, J Waldman, MD Luecken, K Gosik, ...
bioRxiv, 2020
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