Gipsi Lima Mendez
Gipsi Lima Mendez
Senior Computational Biologist, UCLouvain, Belgium
Verified email at uclouvain.be
Title
Cited by
Cited by
Year
Structure and function of the global ocean microbiome
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Science 348 (6237), 2015
10932015
Population-level analysis of gut microbiome variation
G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ...
Science 352 (6285), 560-564, 2016
9382016
Eukaryotic plankton diversity in the sunlit ocean
C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ...
Science 348 (6237), 2015
9292015
Determinants of community structure in the global plankton interactome
G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ...
Science 348 (6237), 2015
4422015
A holistic approach to marine eco-systems biology
E Karsenti, SG Acinas, P Bork, C Bowler, C De Vargas, J Raes, M Sullivan, ...
PLoS biol 9 (10), e1001177, 2011
3152011
Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
R Logares, S Sunagawa, G Salazar, FM Cornejo‐Castillo, I Ferrera, ...
Environmental microbiology 16 (9), 2659-2671, 2014
2352014
ACLAME: a CLAssification of Mobile genetic Elements, update 2010
R Leplae, G Lima-Mendez, A Toussaint
Nucleic acids research 38 (suppl_1), D57-D61, 2010
2122010
Reticulate representation of evolutionary and functional relationships between phage genomes
G Lima-Mendez, J Van Helden, A Toussaint, R Leplae
Molecular biology and evolution 25 (4), 762-777, 2008
2052008
The powerful law of the power law and other myths in network biology
G Lima-Mendez, J van Helden
Molecular BioSystems 5 (12), 1482-1493, 2009
1902009
Prophinder: a computational tool for prophage prediction in prokaryotic genomes
G Lima-Mendez, J Van Helden, A Toussaint, R Leplae
Bioinformatics 24 (6), 863-865, 2008
1872008
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
P Hingamp, N Grimsley, SG Acinas, C Clerissi, L Subirana, J Poulain, ...
The ISME journal 7 (9), 1678-1695, 2013
1442013
A global ocean atlas of eukaryotic genes
Q Carradec, E Pelletier, C Da Silva, A Alberti, Y Seeleuthner, ...
Nature communications 9 (1), 1-13, 2018
1132018
NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
S Brohée, K Faust, G Lima-Mendez, O Sand, R Janky, G Vanderstocken, ...
Nucleic acids research 36 (suppl_2), W444-W451, 2008
1082008
Network Analysis Tools: from biological networks to clusters and pathways
S Brohée, K Faust, G Lima-Mendez, G Vanderstocken, J Van Helden
Nature protocols 3 (10), 1616-1629, 2008
1062008
Species–function relationships shape ecological properties of the human gut microbiome
S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, RG Yunta, S Okuda, ...
Nature microbiology 1 (8), 1-8, 2016
952016
Cross-biome comparison of microbial association networks
K Faust, G Lima-Mendez, JS Lerat, JF Sathirapongsasuti, R Knight, ...
Frontiers in microbiology 6, 1200, 2015
822015
Tara Oceans coordinators
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Bowler, C. de Vargas, G. Gorsky, N. Grimsley, P. Hingamp, D. Iudicone, O …, 2015
612015
Analysis of the phage sequence space: the benefit of structured information
G Lima-Mendez, A Toussaint, R Leplae
Virology 365 (2), 241-249, 2007
592007
A modular view of the bacteriophage genomic space: identification of host and lifestyle marker modules
G Lima-Mendez, A Toussaint, R Leplae
Research in microbiology 162 (8), 737-746, 2011
522011
Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota
RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez, J Wang, ...
Gut 68 (7), 1180-1189, 2019
442019
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