Matthew L. Bendall
Matthew L. Bendall
Weill Cornell Medicine, Division of Infectious Diseases
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Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ...
The ISME journal 10 (7), 1589-1601, 2016
Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls
E Castro-Nallar, ML Bendall, M Pérez-Losada, S Sabuncyan, ...
PeerJ 3, e1140, 2015
Pathoscope: species identification and strain attribution with unassembled sequencing data
OE Francis, M Bendall, S Manimaran, C Hong, NL Clement, ...
Genome research 23 (10), 1721-1729, 2013
The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea …
HD Bracken-Grissom, ST Ahyong, RD Wilkinson, RM Feldmann, ...
Systematic Biology 63 (4), 457-479, 2014
Dual transcriptomic profiling of host and microbiota during health and disease in pediatric asthma
M Pérez-Losada, E Castro-Nallar, ML Bendall, RJ Freishtat, KA Crandall
PloS one 10 (6), e0131819, 2015
Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry
RA Heins, X Cheng, S Nath, K Deng, BP Bowen, DC Chivian, S Datta, ...
ACS chemical biology 9 (9), 2082-2091, 2014
Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1
ML Bendall, K Luong, KM Wetmore, M Blow, J Korlach, A Deutschbauer, ...
Journal of bacteriology 195 (21), 4966-4974, 2013
Phylogenetic relationships and molecular adaptation dynamics of human rhinoviruses
N Lewis-Rogers, ML Bendall, KA Crandall
Molecular biology and evolution 26 (5), 969-981, 2009
Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression
ML Bendall, M De Mulder, LP Iñiguez, A Lecanda-Sánchez, ...
PLoS computational biology 15 (9), e1006453, 2019
Transcriptome patterns in hidradenitis suppurativa: support for the role of antimicrobial peptides and interferon pathways in disease pathogenesis
VK Shanmugam, D Jones, S McNish, ML Bendall, KA Crandall
Clinical and experimental dermatology 44 (8), 882-892, 2019
Evaluation of haplotype callers for next-generation sequencing of viruses
A Eliseev, KM Gibson, P Avdeyev, D Novik, ML Bendall, M Pérez-Losada, ...
Infection, Genetics and Evolution 82, 104277, 2020
A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing
KM Gibson, K Jair, AD Castel, ML Bendall, B Wilbourn, JA Jordan, ...
Scientific reports 10 (1), 1-18, 2020
Long-read, whole-genome shotgun sequence data for five model organisms. Sci. Data 1: 140045
KE Kim, P Peluso, P Babayan, PJ Yeadon, C Yu, WW Fisher, CS Chin, ...
Benchmark evaluation of true single molecular sequencing to determine cystic fibrosis airway microbiome diversity
A Hahn, ML Bendall, KM Gibson, H Chaney, I Sami, GF Perez, ...
Frontiers in microbiology 9, 1069, 2018
Phylogenetics applied to genotype/phenotype association and selection analyses with sequence data from angptl4 in humans
TJ Maxwell, ML Bendall, J Staples, T Jarvis, KA Crandall
International journal of molecular sciences 11 (1), 370-385, 2010
Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus
LP Iñiguez, M de Mulder Rougvie, N Stearrett, RB Jones, CE Ormsby, ...
Proceedings of the National Academy of Sciences 116 (43), 21350-21351, 2019
HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intra-Host Viral Populations
ML Bendall, KM Gibson, MC Steiner, U Rentia, M Pérez-Losada, ...
Molecular Biology and Evolution, 2020
Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival
AR Kolbe, ML Bendall, AT Pearson, D Paul, DF Nixon, M Pérez-Losada, ...
Viruses 12 (9), 956, 2020
Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses
KM Gibson, MC Steiner, U Rentia, ML Bendall, M Pérez-Losada, ...
Viruses 12 (7), 758, 2020
Expression of Human Endogenous Retroviruses in Systemic Lupus Erythematosus: Multiomic Integration with Gene Expression
N Stearrett, T Dawson, G Rahnavard, P Bachali, ML Bendall, C Zeng, ...
Frontiers in Immunology 12, 1485, 2021
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