Eugene Kapp
Eugene Kapp
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Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 …
GS Omenn, DJ States, M Adamski, TW Blackwell, R Menon, H Hermjakob, ...
Proteomics 5 (13), 3226-3245, 2005
A common open representation of mass spectrometry data and its application to proteomics research
PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ...
Nature biotechnology 22 (11), 1459-1466, 2004
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis
EA Kapp, F Schütz, LM Connolly, JA Chakel, JE Meza, CA Miller, D Fenyo, ...
Proteomics 5 (13), 3475-3490, 2005
A HUPO test sample study reveals common problems in mass spectrometry–based proteomics
AW Bell, EW Deutsch, CE Au, RE Kearney, R Beavis, S Sechi, T Nilsson, ...
Nature methods 6 (6), 423, 2009
Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation
EA Kapp, F Schütz, GE Reid, JS Eddes, RL Moritz, RAJ O'Hair, TP Speed, ...
Analytical chemistry 75 (22), 6251-6264, 2003
An aspartyl protease directs malaria effector proteins to the host cell
JA Boddey, AN Hodder, S Günther, PR Gilson, H Patsiouras, EA Kapp, ...
Nature 463 (7281), 627-631, 2010
Carbon accumulation at depth in Ferralsols under zero‐till subtropical agriculture
RM Boddey, CP Jantalia, PC Conceicao, JA Zanatta, C Bayer, ...
Global Change Biology 16 (2), 784-795, 2010
A proteome strategy for fractionating proteins and peptides using continuous free-flow electrophoresis coupled off-line to reversed-phase high-performance liquid chromatography
RL Moritz, H Ji, F Schütz, LM Connolly, EA Kapp, TP Speed, RJ Simpson
Analytical chemistry 76 (16), 4811-4824, 2004
Oncogenic H-ras reprograms Madin-Darby canine kidney (MDCK) cell-derived exosomal proteins following epithelial-mesenchymal transition
BJ Tauro, RA Mathias, DW Greening, SK Gopal, H Ji, EA Kapp, ...
Molecular & cellular proteomics 12 (8), 2148-2159, 2013
Quantitative in vivo analyses reveal calcium-dependent phosphorylation sites and identifies a novel component of the Toxoplasma invasion motor complex
T Nebl, JH Prieto, E Kapp, BJ Smith, MJ Williams, JR Yates 3rd, ...
PLoS Pathog 7 (9), e1002222, 2011
Statistical and mechanistic approaches to understanding the gas-phase fragmentation behavior of methionine sulfoxide containing peptides
GE Reid, KD Roberts, EA Kapp, RJ Simpson
Journal of proteome research 3 (4), 751-759, 2004
Overview of tandem mass spectrometry (MS/MS) database search algorithms
E Kapp, F Schütz
Current Protocols in Protein Science 49 (1), 25.2. 1-25.2. 19, 2007
Difference gel electrophoresis analysis of Ras‐transformed fibroblast cell‐derived exosomes
H Ji, N Erfani, BJ Tauro, EA Kapp, HJ Zhu, RL Moritz, JWE Lim, ...
Electrophoresis 29 (12), 2660-2671, 2008
Secretome-based proteomic profiling of Ras-transformed MDCK cells reveals extracellular modulators of epithelial-mesenchymal transition
RA Mathias, B Wang, H Ji, EA Kapp, RL Moritz, HJ Zhu, RJ Simpson
Journal of proteome research 8 (6), 2827-2837, 2009
Application of 2‐D free‐flow electrophoresis/RP‐HPLC for proteomic analysis of human plasma depleted of multi high‐abundance proteins
RL Moritz, AB Clippingdale, EA Kapp, JS Eddes, H Ji, S Gilbert, ...
Proteomics 5 (13), 3402-3413, 2005
Deriving statistical models for predicting peptide tandem MS product ion intensities
F Schütz, EA Kapp, RJ Simpson, TP Speed
Biochemical Society Transactions 31 (6), 1479-1483, 2003
CHOMPER: A bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high‐throughput proteomic strategies
JS Eddes, EA Kapp, DF Frecklington, LM Connolly, MJ Layton, RL Moritz, ...
PROTEOMICS: International Edition 2 (9), 1097-1103, 2002
Current protocols in protein science
N Eswar, B Webb, MA Marti-Renom, MS Madhusudhan, D Eramian, ...
Current Protocols in Protein Science 50, 2.9, 2007
Extracellular remodelling during oncogenic Ras-induced epithelial-mesenchymal transition facilitates MDCK cell migration
RA Mathias, YS Chen, B Wang, H Ji, EA Kapp, RL Moritz, HJ Zhu, ...
Journal of proteome research 9 (2), 1007-1019, 2010
Triton X-114 phase separation in the isolation and purification of mouse liver microsomal membrane proteins
RA Mathias, YS Chen, EA Kapp, DW Greening, S Mathivanan, ...
Methods 54 (4), 396-406, 2011
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