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Svetlana Lyalina
Svetlana Lyalina
Bioinformatics PhD, UCSF
Verified email at gladstone.ucsf.edu
Title
Cited by
Cited by
Year
Cooking shapes the structure and function of the gut microbiome
RN Carmody, JE Bisanz, BP Bowen, CF Maurice, S Lyalina, KB Louie, ...
Nature microbiology 4 (12), 2052-2063, 2019
1352019
Caloric restriction disrupts the microbiota and colonization resistance
RJ von Schwartzenberg, JE Bisanz, S Lyalina, P Spanogiannopoulos, ...
Nature 595 (7866), 272-277, 2021
1342021
Topical silver diamine fluoride for dental caries arrest in preschool children: A randomized controlled trial and microbiological analysis of caries associated microbes and …
P Milgrom, JA Horst, S Ludwig, M Rothen, BW Chaffee, S Lyalina, ...
Journal of dentistry 68, 72-78, 2018
1272018
Whole-genome sequencing of drug-resistant Salmonella enterica isolates from dairy cattle and humans in New York and Washington states reveals source and geographic associations
LM Carroll, M Wiedmann, H den Bakker, J Siler, S Warchocki, D Kent, ...
Applied and environmental microbiology 83 (12), e00140-17, 2017
1042017
Exome sequencing in 32 patients with anophthalmia/microphthalmia and developmental eye defects
AM Slavotinek, ST Garcia, G Chandratillake, T Bardakjian, E Ullah, D Wu, ...
Clinical genetics 88 (5), 468-473, 2015
742015
Identifying phenotypic signatures of neuropsychiatric disorders from electronic medical records
S Lyalina, B Percha, P LePendu, SV Iyer, RB Altman, NH Shah
Journal of the American Medical Informatics Association 20 (e2), e297-e305, 2013
732013
Meta-analysis of vaginal microbiome data provides new insights into preterm birth
I Kosti, S Lyalina, AJ Butte, M Sirota
Frontiers in Microbiology 11, 520111, 2020
602020
Development of inflammatory bowel disease is linked to a longitudinal restructuring of the gut metagenome in mice
T Sharpton, S Lyalina, J Luong, J Pham, EM Deal, C Armour, C Gaulke, ...
Msystems 2 (5), 10.1128/msystems. 00036-17, 2017
442017
Gut microbiome stability and dynamics in healthy donors and patients with non-gastrointestinal cancers
AL Byrd, M Liu, KE Fujimura, S Lyalina, DR Nagarkar, B Charbit, ...
Journal of Experimental Medicine 218 (1), 2021
402021
Penalized regression for left-truncated and right-censored survival data
SF McGough, D Incerti, S Lyalina, R Copping, B Narasimhan, R Tibshirani
Statistics in Medicine 40 (25), 5487–5500, 2021
272021
AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design
KC Keough, S Lyalina, MP Olvera, S Whalen, BR Conklin, KS Pollard
Genome biology 20, 1-9, 2019
262019
Development of inflammatory bowel disease is linked to a longitudinal restructuring of the gut metagenome in mice. mSystems 2: e00036-17
T Sharpton, S Lyalina, J Luong, J Pham, EM Deal, C Armour, C Gaulke, ...
102017
Single cell genome sequencing of laboratory mouse microbiota improves taxonomic and functional resolution of this model microbial community
S Lyalina, R Stepanauskas, F Wu, S Sanjabi, KS Pollard
Plos one 17 (4), e0261795, 2022
32022
Prognostic pan-cancer and single-cancer models: A large-scale analysis using a real-world clinico-genomic database
SF McGough, S Lyalina, D Incerti, Y Huang, S Tyanova, K Mace, ...
medRxiv, 2023.12. 18.23300166, 2023
12023
Manganese-enhanced MRI detects live human amnion-derived mesenchymal stem cells in vivo after transplantation and restoration of myocardial function in a pig ischemia …
R Dash, I Toma, F Ikeno, JK Lyons, S Heidary, MC Parent, INE Wang, ...
Journal of Cardiovascular Magnetic Resonance 14, 1-4, 2012
12012
P1244: AN AUTOMATED QUANTIFICATION ALGORITHM FOR EVALUATING TOTAL METABOLIC TUMOR VOLUME IN PATIENTS WITH FDG-AVID LYMPHOMAS USING A DEEP LEARNING MODEL
T Xu, S Jemaa, M Kumar, S Balasubramanian, A Shamas-Din, S Lyalina, ...
HemaSphere 7 (S3), e53649d2, 2023
2023
An automated quantification algorithm for evaluating total metabolic tumor volume in patients with FDG‐avid lymphomas using a deep learning model
T Xu, S Jemaa, M Kumar, S Balasubramanian, A Shamas‐Din, S Lyalina, ...
Hematological Oncology 41, 342-344, 2023
2023
Negative impact of the GABA pathway on aPD (L) 1 immunotherapy
S Lyalina, G Ortiz-Munoz, K Yuen, I Mellman, S Mariathasan, M Albert, ...
Cancer Research 83 (7_Supplement), 4439-4439, 2023
2023
Abstract A17: Pan-solid tumor comparison of variant detection in paired liquid and tissue biopsies
ZJF Assaf, S Sivakumar, DX Jin, SL Maund, S Lyalina, G Walia, ES Sokol, ...
Clinical Cancer Research 26 (11_Supplement), A17-A17, 2020
2020
Estimation of growth rate and viability from genome coverage
KL Beck, M Kunitomi, S Lyalina
US Patent App. 16/147,777, 2020
2020
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Articles 1–20