Svetlana Lyalina
Svetlana Lyalina
Bioinformatics PhD, UCSF
Verified email at gladstone.ucsf.edu
Title
Cited by
Cited by
Year
Cooking shapes the structure and function of the gut microbiome
RN Carmody, JE Bisanz, BP Bowen, CF Maurice, S Lyalina, KB Louie, ...
Nature microbiology 4 (12), 2052-2063, 2019
692019
Whole-genome sequencing of drug-resistant Salmonella enterica isolates from dairy cattle and humans in New York and Washington states reveals source and geographic associations
LM Carroll, M Wiedmann, H den Bakker, J Siler, S Warchocki, D Kent, ...
Applied and environmental microbiology 83 (12), e00140-17, 2017
682017
Topical silver diamine fluoride for dental caries arrest in preschool children: A randomized controlled trial and microbiological analysis of caries associated microbes and …
P Milgrom, JA Horst, S Ludwig, M Rothen, BW Chaffee, S Lyalina, ...
Journal of dentistry 68, 72-78, 2018
602018
Identifying phenotypic signatures of neuropsychiatric disorders from electronic medical records
S Lyalina, B Percha, P LePendu, SV Iyer, RB Altman, NH Shah
Journal of the American Medical Informatics Association 20 (e2), e297-e305, 2013
602013
Exome sequencing in 32 patients with anophthalmia/microphthalmia and developmental eye defects
AM Slavotinek, ST Garcia, G Chandratillake, T Bardakjian, E Ullah, D Wu, ...
Clinical genetics 88 (5), 468-473, 2015
582015
Development of inflammatory bowel disease is linked to a longitudinal restructuring of the gut metagenome in mice
T Sharpton, S Lyalina, J Luong, J Pham, EM Deal, C Armour, C Gaulke, ...
Msystems 2 (5), e00036-17, 2017
26*2017
AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design
KC Keough, S Lyalina, MP Olvera, S Whalen, BR Conklin, KS Pollard
Genome biology 20 (1), 1-9, 2019
162019
Meta-analysis of vaginal microbiome data provides new insights into preterm birth
I Kosti, S Lyalina, KS Pollard, AJ Butte, M Sirota
Frontiers in microbiology 11, 476, 2020
132020
Caloric restriction disrupts the microbiota and colonization resistance
RJ von Schwartzenberg, JE Bisanz, S Lyalina, P Spanogiannopoulos, ...
Nature, 1-6, 2021
72021
Gut microbiome stability and dynamics in healthy donors and patients with non-gastrointestinal cancers
AL Byrd, M Liu, KE Fujimura, S Lyalina, DR Nagarkar, B Charbit, ...
Journal of Experimental Medicine 218 (1), e20200606, 2020
72020
Manganese-enhanced MRI detects live human amnion-derived mesenchymal stem cells in vivo after transplantation and restoration of myocardial function in a pig ischemia …
R Dash, I Toma, F Ikeno, JK Lyons, S Heidary, MC Parent, INE Wang, ...
Journal of Cardiovascular Magnetic Resonance 14 (1), 1-4, 2012
12012
Penalized regression for left-truncated and right-censored survival data
SF McGough, D Incerti, S Lyalina, R Copping, B Narasimhan, R Tibshirani
medRxiv, 2021
2021
Pan-solid tumor comparison of variant detection in paired liquid and tissue biopsies
ZJF Assaf, S Sivakumar, DX Jin, SL Maund, S Lyalina, G Walia, ES Sokol, ...
CLINICAL CANCER RESEARCH 26 (11), 42-43, 2020
2020
Abstract A17: Pan-solid tumor comparison of variant detection in paired liquid and tissue biopsies
ZJF Assaf, S Sivakumar, DX Jin, SL Maund, S Lyalina, G Walia, ES Sokol, ...
Clinical Cancer Research 26 (11 Supplement), A17-A17, 2020
2020
Estimation of growth rate and viability from genome coverage
KL Beck, M Kunitomi, S Lyalina
US Patent App. 16/147,777, 2020
2020
Stability and dynamics of the human gut microbiome and its association with systemic immune traits
AL Byrd, M Liu, KE Fujimura, S Lyalina, DR Nagarkar, B Charbit, ...
bioRxiv, 2020
2020
Mining the gut microbiome for temporal signals of inflammatory bowel disease and novel symbiont genomes
S Lyalina
UCSF, 2018
2018
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Articles 1–17