Rory Donovan-Maiye
Rory Donovan-Maiye
Scientist, Allen Institute for Cell Science
Verified email at alumni.reed.edu - Homepage
Title
Cited by
Cited by
Year
Efficient stochastic simulation of chemical kinetics networks using a weighted ensemble of trajectories
RM Donovan, AJ Sedgewick, JR Faeder, DM Zuckerman
The Journal of chemical physics 139 (11), 09B642_1, 2013
382013
Learning mixed graphical models with separate sparsity parameters and stability-based model selection
AJ Sedgewick, I Shi, RM Donovan, PV Benos
BMC bioinformatics 17 (S5), S175, 2016
332016
Degradation of MgB/sub 2/thin films in water
Y Cui, JE Jones, A Beckley, R Donovan, D Lishego, E Maertz, ...
IEEE transactions on applied superconductivity 15 (2), 224-227, 2005
302005
Unbiased rare event sampling in spatial stochastic systems biology models using a weighted ensemble of trajectories
RM Donovan, JJ Tapia, DP Sullivan, JR Faeder, RF Murphy, M Dittrich, ...
PLoS computational biology 12 (2), e1004611, 2016
262016
Generative modeling with conditional autoencoders: Building an integrated cell
GR Johnson, RM Donovan-Maiye, MM Maleckar
arXiv preprint arXiv:1705.00092, 2017
162017
Biophysical comparison of ATP synthesis mechanisms shows a kinetic advantage for the rotary process
R Anandakrishnan, Z Zhang, R Donovan-Maiye, DM Zuckerman
Proceedings of the National Academy of Sciences 113 (40), 11220-11225, 2016
152016
Building a 3D integrated cell
GR Johnson, RM Donovan-Maiye, MM Maleckar
bioRxiv, 238378, 2017
42017
Cell states beyond transcriptomics: integrating structural organization and gene expression in hiPSC-derived cardiomyocytes
KA Gerbin, T Grancharova, R Donovan-Maiye, MC Hendershott, J Brown, ...
bioRxiv, 2020
22020
Studying stem cell organization using “label-free” methods and a novel generative adversarial model
G Johnson, R Donovan-Maiye, C Ounkomol, MM Maleckar
Biophysical Journal 114 (3), 43a, 2018
12018
Systematic testing of belief-propagation estimates for absolute free energies in atomistic peptides and proteins
RM Donovan-Maiye, CJ Langmead, DM Zuckerman
Journal of chemical theory and computation 14 (1), 426-443, 2018
12018
Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data Across 27 Tissue Types
CC Funk, AM Casella, S Jung, MA Richards, A Rodriguez, P Shannon, ...
Cell reports 32 (7), 108029, 2020
2020
O3‐03‐01: MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE
CC Funk, MA Richards, P Shannon, R Donovan-Maiye, N Rappaport, ...
Alzheimer's & Dementia 14 (7S_Part_19), P1014-P1015, 2018
2018
A novel conditional model of cell organization: building an integrated cell
GR Johnson, R Donovan-Maiye, MM Maleckar, CD Williams
INTEGRATIVE AND COMPARATIVE BIOLOGY 58, E109-E109, 2018
2018
BDQC: a general-purpose analytics tool for domain-blind validation of Big Data
EW Deutsch, R Kramer, J Ames, A Bauman, DS Campbell, K Chard, ...
bioRxiv, 258822, 2018
2018
Efficient Sampling in Stochastic Biological Models
R Donovan-Maiye
University of Pittsburgh, 2016
2016
Quantization of Constrained Systems
RM Donovan
Reed College, 2004
2004
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