| Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells Y Kawamura, K Saito, T Kin, Y Ono, K Asai, T Sunohara, TN Okada, ... Nature 453 (7196), 793-797, 2008 | 550 | 2008 |
| A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila K Saito, S Inagaki, T Mituyama, Y Kawamura, Y Ono, E Sakota, H Kotani, ... Nature 461 (7268), 1296-1299, 2009 | 477 | 2009 |
| PBSIM: PacBio reads simulator—toward accurate genome assembly Y Ono, K Asai, M Hamada Bioinformatics 29 (1), 119-121, 2013 | 359 | 2013 |
| Highly selective tuning of a silkworm olfactory receptor to a key mulberry leaf volatile K Tanaka, Y Uda, Y Ono, T Nakagawa, M Suwa, R Yamaoka, K Touhara Current Biology 19 (11), 881-890, 2009 | 277 | 2009 |
| fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences T Kin, K Yamada, G Terai, H Okida, Y Yoshinari, Y Ono, A Kojima, ... Nucleic acids research 35 (suppl_1), D145-D148, 2007 | 182 | 2007 |
| The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs T Mituyama, K Yamada, E Hattori, H Okida, Y Ono, G Terai, A Yoshizawa, ... Nucleic acids research 37 (suppl_1), D89-D92, 2009 | 148 | 2009 |
| LncRRIsearch: a web server for lncRNA-RNA interaction prediction integrated with tissue-specific expression and subcellular localization data T Fukunaga, J Iwakiri, Y Ono, M Hamada Frontiers in genetics 10, 454941, 2019 | 111 | 2019 |
| PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores Y Ono, K Asai, M Hamada Bioinformatics 37 (5), 589-595, 2021 | 96 | 2021 |
| Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat T Kin, Y Ono Bioinformatics 23 (21), 2945-2946, 2007 | 78 | 2007 |
| Automatic gene collection system for genome-scale overview of G-protein coupled receptors in eukaryotes Y Ono, W Fujibuchi, M Suwa Gene 364, 63-73, 2005 | 40 | 2005 |
| Functional and structural overview of G-protein-coupled receptors comprehensively obtained from genome sequences M Suwa, M Sugihara, Y Ono Pharmaceuticals 4 (4), 652-664, 2011 | 33 | 2011 |
| PBSIM3: a simulator for all types of PacBio and ONT long reads Y Ono, M Hamada, K Asai NAR Genomics and Bioinformatics 4 (4), lqac092, 2022 | 21 | 2022 |
| MeCP2 levels regulate the 3D structure of heterochromatic foci in mouse neurons A Ito-Ishida, SA Baker, RV Sillitoe, Y Sun, J Zhou, Y Ono, J Iwakiri, ... Journal of Neuroscience 40 (45), 8746-8766, 2020 | 19 | 2020 |
| Rtools: a web server for various secondary structural analyses on single RNA sequences M Hamada, Y Ono, H Kiryu, K Sato, Y Kato, T Fukunaga, R Mori, K Asai Nucleic acids research 44 (W1), W302-W307, 2016 | 19 | 2016 |
| AMAP: A pipeline for whole-genome mutation detection in Arabidopsis thaliana K Ishii, Y Kazama, T Hirano, M Hamada, Y Ono, M Yamada, T Abe Genes & genetic systems 91 (4), 229-233, 2016 | 18 | 2016 |
| Learning chromatin states with factorized information criteria M Hamada, Y Ono, R Fujimaki, K Asai Bioinformatics 31 (15), 2426-2433, 2015 | 14 | 2015 |
| Computational overview of GPCR gene universe to support reverse chemical genomics study M Suwa, Y Ono Reverse Chemical Genetics: Methods and Protocols, 41-54, 2009 | 9 | 2009 |
| A bioinformatics strategy to produce a cyclically developing project structure-Comprehensive functional analysis of the drug design target genes M Suwa, Y Ono Synthesiology English edition 3 (1), 1-12, 2010 | 6 | 2010 |
| Highly selective tuning of a silkworm olfactory receptor to a key mulberry leaf volatile K Tanaka, Y Uda, Y Ono, T Nakagawa, M Suwa, R Yamaoka, K Touhara Current Biology 21 (7), 623, 2011 | 3 | 2011 |
| Rtools: a web server for various secondary structural analyses on single RNA sequences Y Ono, K Asai RNA Structure Prediction, 1-14, 2023 | 1 | 2023 |
