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Alexey M. Kozlov
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis
Bioinformatics 35 (21), 4453-4455, 2019
15902019
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models
D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri
Molecular biology and evolution 37 (1), 291-294, 2020
7292020
Eleven grand challenges in single-cell data science
D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ...
Genome biology 21 (1), 1-35, 2020
5882020
Evolutionary history of the Hymenoptera
RS Peters, L Krogmann, C Mayer, A Donath, S Gunkel, K Meusemann, ...
Current Biology 27 (7), 1013-1018, 2017
5872017
EPA-ng: massively parallel evolutionary placement of genetic sequences
P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ...
Systematic biology 68 (2), 365-369, 2019
3062019
ExaML version 3: a tool for phylogenomic analyses on supercomputers
AM Kozlov, AJ Aberer, A Stamatakis
Bioinformatics 31 (15), 2577-2579, 2015
2182015
Phylogenomics and the evolution of hemipteroid insects
KP Johnson, CH Dietrich, F Friedrich, RG Beutel, B Wipfler, RS Peters, ...
Proceedings of the National Academy of Sciences 115 (50), 12775-12780, 2018
2162018
Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests
F Mahé, C de Vargas, D Bass, L Czech, A Stamatakis, E Lara, D Singer, ...
Nature ecology & evolution 1 (4), 0091, 2017
2132017
Phylogenomic analysis of Apoidea sheds new light on the sister group of bees
M Sann, O Niehuis, RS Peters, C Mayer, A Kozlov, L Podsiadlowski, ...
BMC evolutionary biology 18, 1-15, 2018
1452018
Phylogenetic analysis of SARS-CoV-2 data is difficult
B Morel, P Barbera, L Czech, B Bettisworth, L Hübner, S Lutteropp, ...
Molecular biology and evolution 38 (5), 1777-1791, 2021
1112021
Phylogeny-aware identification and correction of taxonomically mislabeled sequences
AM Kozlov, J Zhang, P Yilmaz, FO Glöckner, A Stamatakis
Nucleic acids research 44 (11), 5022-5033, 2016
912016
Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae)
S Bank, M Sann, C Mayer, K Meusemann, A Donath, L Podsiadlowski, ...
Molecular phylogenetics and evolution 116, 213-226, 2017
882017
Long‐read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity
M Jamy, R Foster, P Barbera, L Czech, A Kozlov, A Stamatakis, ...
Molecular Ecology Resources 20 (2), 429-443, 2020
722020
Transcriptome sequence-based phylogeny of chalcidoid wasps (Hymenoptera: Chalcidoidea) reveals a history of rapid radiations, convergence, and evolutionary success
RS Peters, O Niehuis, S Gunkel, M Bläser, C Mayer, L Podsiadlowski, ...
Molecular phylogenetics and evolution 120, 286-296, 2018
712018
GeneRax: a tool for species-tree-aware maximum likelihood-based gene family tree inference under gene duplication, transfer, and loss
B Morel, AM Kozlov, A Stamatakis, GJ Szöllősi
Molecular biology and evolution 37 (9), 2763-2774, 2020
512020
New data, same story: phylogenomics does not support Syrphoidea (Diptera: Syrphidae, Pipunculidae)
T Pauli, TO Burt, K Meusemann, K Bayless, A Donath, L Podsiadlowski, ...
Systematic Entomology 43 (3), 447-459, 2018
412018
ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes
B Morel, AM Kozlov, A Stamatakis
Bioinformatics 35 (10), 1771-1773, 2019
402019
Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system
N Psonis, A Antoniou, E Karameta, AD Leaché, P Kotsakiozi, D Darriba, ...
Molecular Phylogenetics and Evolution 125, 100-115, 2018
372018
A roadmap for global synthesis of the plant tree of life
WL Eiserhardt, A Antonelli, DJ Bennett, LR Botigué, JG Burleigh, ...
American Journal of Botany 105 (3), 614-622, 2018
322018
RAxML-NG: a fast, scalable, and user-friendly tool for maximum likelihood phylogenetic inference. bioRxiv 447110
A Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis
312018
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Artiklar 1–20