Jörg Hakenberg

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Ulf LeserKnowledge Management in Bioinformatics, Humboldt-Universität zu BerlinVerifierad e-postadress på informatik.hu-berlin.de
Graciela Gonzalez-HernandezDep. of Epidemiology, Biostatistics, and Informatics, Univ of PennsylvaniaVerifierad e-postadress på upenn.edu
Luis TariUpToDate, Wolters Kluwer HealthVerifierad e-postadress på asu.edu
Michael SchroederProfessor in Bioinformatics, TU DresdenVerifierad e-postadress på biotec.tu-dresden.de
Chitta BaralProfessor of Computer Science, Arizona State UniversityVerifierad e-postadress på asu.edu
Robert LeamanResearcher, NCBI/NLM/NIHVerifierad e-postadress på nih.gov
Aaron CohenAssociate Professor, Oregon Health & Science UniversityVerifierad e-postadress på ohsu.edu
Philippe ThomasGerman Research Center for Artificial IntelligenceVerifierad e-postadress på dfki.de
Domonkos TikkGravity R&DVerifierad e-postadress på gravityrd.com
Alexander A MorganKhosla VenturesVerifierad e-postadress på stanford.edu
Jinbo XuProfessor, Toyota Technological Institute at ChicagoVerifierad e-postadress på ttic.edu
Serafim BatzoglouSeerVerifierad e-postadress på seer.bio
Laksshman SundaramGraduate Student in Computer Science, Stanford UniversityVerifierad e-postadress på stanford.edu
Kyle Kai-How FarhPrincipal Investigator, Illumina AI LabVerifierad e-postadress på illumina.com
Yi ChenNew Jersey Institute of TechnologyVerifierad e-postadress på njit.edu
Tran Cao SonProfessor of Computer Science, New Mexico State UniversityVerifierad e-postadress på cs.nmsu.edu
Dietrich Rebholz-SchuhmannZB MED -- Information Center for Life SciencesVerifierad e-postadress på zbmed.de
Benjamin GlicksbergHasso Plattner Institute for Digital Health, Icahn School of Medicine at Mount SinaiVerifierad e-postadress på mssm.edu
Goran NenadicDepartment of Computer Science, University of ManchesterVerifierad e-postadress på manchester.ac.uk
Patrick RuchProfessor at HES-SO Geneva & SIB Swiss Institute of BioinformaticsVerifierad e-postadress på hesge.ch

Jörg Hakenberg

Illumina, Inc.

Verifierad e-postadress på illumina.com - Startsida

Bioinformatics


Titel Sortera efter citat Sortera efter år Sortera efter titel	Citeras av Citeras av	År
Overview of BioCreative II gene normalization AA Morgan, Z Lu, X Wang, AM Cohen, J Fluck, P Ruch, A Divoli, K Fundel, ... Genome biology 9 (2), 1-19, 2008	359	2008
Class II HLA-DC beta-chain DNA restriction fragments differentiate among HLA-DR2 individuals in insulin-dependent diabetes and multiple sclerosis D Cohen, O Cohen, A Marcadet, C Massart, M Lathrop, I Deschamps, ... Proceedings of the National Academy of Sciences 81 (6), 1774-1778, 1984	283	1984
Genomic hallmarks and structural variation in metastatic prostate cancer DA Quigley, HX Dang, SG Zhao, P Lloyd, R Aggarwal, JJ Alumkal, A Foye, ... Cell 174 (3), 758-769. e9, 2018	265	2018
Analysis of 589,306 genomes identifies individuals resilient to severe Mendelian childhood diseases R Chen, L Shi, J Hakenberg, B Naughton, P Sklar, J Zhang, H Zhou, ... Nature biotechnology 34 (5), 531-538, 2016	243	2016
What makes a gene name? Named entity recognition in the biomedical literature U Leser, J Hakenberg Briefings in bioinformatics 6 (4), 357-369, 2005	200	2005
A comprehensive benchmark of kernel methods to extract protein–protein interactions from literature D Tikk, P Thomas, P Palaga, J Hakenberg, U Leser PLoS Comput Biol 6 (7), e1000837, 2010	198	2010
AliBaba: PubMed as a graph C Plake, T Schiemann, M Pankalla, J Hakenberg, U Leser Bioinformatics 22 (19), 2444-2445, 2006	180	2006
Inter-species normalization of gene mentions with GNAT J Hakenberg, C Plake, R Leaman, M Schroeder, G Gonzalez Bioinformatics 24 (16), i126-i132, 2008	148	2008
MAPPP: MHC class I antigenic peptide processing prediction. J Hakenberg, AK Nussbaum, H Schild, HG Rammensee, C Kuttler, ... Applied bioinformatics 2 (3), 155-158, 2003	119	2003
Predicting the clinical impact of human mutation with deep neural networks L Sundaram, H Gao, SR Padigepati, JF McRae, Y Li, JA Kosmicki, ... Nature genetics 50 (8), 1161-1170, 2018	118	2018
Gene mention normalization and interaction extraction with context models and sentence motifs J Hakenberg, C Plake, L Royer, H Strobelt, U Leser, M Schroeder Genome biology 9 (2), 1-16, 2008	92	2008
Introducing meta-services for biomedical information extraction F Leitner, M Krallinger, C Rodriguez-Penagos, J Hakenberg, C Plake, ... Genome biology 9 (2), 1-11, 2008	87	2008
The GNAT library for local and remote gene mention normalization J Hakenberg, M Gerner, M Haeussler, I Solt, C Plake, M Schroeder, ... Bioinformatics 27 (19), 2769-2771, 2011	82	2011
Acute Intermittent Porphyria: Predicted Pathogenicity of HMBS Variants Indicates Extremely Low Penetrance of the Autosomal Dominant Disease B Chen, C Solis‐Villa, J Hakenberg, W Qiao, RR Srinivasan, M Yasuda, ... Human mutation 37 (11), 1215-1222, 2016	78	2016
Towards effective sentence simplification for automatic processing of biomedical text S Jonnalagadda, L Tari, J Hakenberg, C Baral, G Gonzalez arXiv preprint arXiv:1001.4277, 2010	62	2010
Efficient extraction of protein-protein interactions from full-text articles J Hakenberg, R Leaman, NH Vo, S Jonnalagadda, R Sullivan, C Miller, ... IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 481-494, 2010	52	2010
LLL’05 challenge: Genic interaction extraction-identification of language patterns based on alignment and finite state automata J Hakenberg, C Plake, U Leser, H Kirsch, D Rebholz-Schuhmann Proceedings of the 4th Learning Language in Logic workshop (LLL05), 38-45, 2005	51	2005
Optimizing syntax patterns for discovering protein-protein interactions C Plake, J Hakenberg, U Leser Proceedings of the 2005 ACM symposium on Applied computing, 195-201, 2005	51	2005
Incremental information extraction using relational databases L Tari, PH Tu, J Hakenberg, Y Chen, TC Son, G Gonzalez, C Baral IEEE Transactions on Knowledge and Data Engineering 24 (1), 86-99, 2010	49	2010
Finding kinetic parameters using text mining J Hakenberg, S Schmeier, A Kowald, E Klipp, U Leser OMICS: A Journal of Integrative Biology 8 (2), 131-152, 2004	49	2004

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