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Rongkun Shen
Rongkun Shen
Associate Professor, SUNY Brockport
Verified email at brockport.edu - Homepage
Title
Cited by
Cited by
Year
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
SA Filichkin, HD Priest, SA Givan, R Shen, DW Bryant, SE Fox, WK Wong, ...
Genome research 20 (1), 45-58, 2010
10152010
Network discovery pipeline elucidates conserved time-of-day–specific cis-regulatory modules
TP Michael, TC Mockler, G Breton, C McEntee, A Byer, JD Trout, ...
PLoS genetics 4 (2), e14, 2008
5742008
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
R Cronn, A Liston, M Parks, DS Gernandt, R Shen, T Mockler
Nucleic acids research 36 (19), e122-e122, 2008
5062008
The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis
TC Mockler, TP Michael, HD Priest, R Shen, CM Sullivan, SA Givan, ...
Cold Spring Harbor symposia on quantitative biology 72, 353-363, 2007
4222007
AML suppresses hematopoiesis by releasing exosomes that contain microRNAs targeting c-MYB
NI Hornick, B Doron, S Abdelhamed, J Huan, CA Harrington, R Shen, ...
Science signaling 9 (444), ra88-ra88, 2016
1532016
miR-218 is essential to establish motor neuron fate as a downstream effector of Isl1–Lhx3
KP Thiebes, H Nam, XA Cambronne, R Shen, SM Glasgow, HH Cho, ...
Nature communications 6 (1), 7718, 2015
882015
Fusion protein Isl1–Lhx3 specifies motor neuron fate by inducing motor neuron genes and concomitantly suppressing the interneuron programs
S Lee, JM Cuvillier, B Lee, R Shen, JW Lee, SK Lee
Proceedings of the National Academy of Sciences 109 (9), 3383-3388, 2012
822012
Capturing microRNA targets using an RNA-induced silencing complex (RISC)-trap approach
XA Cambronne, R Shen, PL Auer, RH Goodman
Proceedings of the National Academy of Sciences 109 (50), 20473-20478, 2012
672012
Supersplat—spliced RNA-seq alignment
DW Bryant Jr, R Shen, HD Priest, WK Wong, TC Mockler
Bioinformatics 26 (12), 1500-1505, 2010
642010
Crucial roles of mixed‐lineage leukemia 3 and 4 as epigenetic switches of the hepatic circadian clock controlling bile acid homeostasis in mice
DH Kim, JC Rhee, S Yeo, R Shen, SK Lee, JW Lee, S Lee
Hepatology 61 (3), 1012-1023, 2015
482015
STAT3 promotes motor neuron differentiation by collaborating with motor neuron-specific LIM complex
S Lee, R Shen, HH Cho, RJ Kwon, SY Seo, JW Lee, SK Lee
Proceedings of the National Academy of Sciences 110 (28), 11445-11450, 2013
412013
Adenylate kinase of Escherichia coli, a component of the phage T4 dNTP synthetase complex
JH Kim, R Shen, MC Olcott, I Rajagopal, CK Mathews
Journal of Biological Chemistry 280 (31), 28221-28229, 2005
262005
Protein–DNA interactions in the T4 dNTP synthetase complex dependent on gene 32 single‐stranded DNA‐binding protein
JH Kim, LJ Wheeler, R Shen, CK Mathews
Molecular microbiology 55 (5), 1502-1514, 2005
242005
Transcriptional profiling of newly generated dentate granule cells using TU tagging reveals pattern shifts in gene expression during circuit integration
C Chatzi, Y Zhang, R Shen, GL Westbrook, RH Goodman
Eneuro 3 (1), 2016
212016
Molecular interactions involving Escherichia coli nucleoside diphosphate kinase
R Shen, LJ Wheeler, CK Mathews
Journal of bioenergetics and biomembranes 38, 255-259, 2006
212006
Escherichia coli nucleoside diphosphate kinase interactions with T4 phage proteins of deoxyribonucleotide synthesis and possible regulatory functions
R Shen, MC Olcott, JH Kim, I Rajagopal, CK Mathews
Journal of Biological Chemistry 279 (31), 32225-32232, 2004
202004
Correction: Corrigendum: miR-218 is essential to establish motor neuron fate as a downstream effector of Isl1–Lhx3
KP Thiebes, H Nam, XA Cambronne, R Shen, SM Glasgow, HH Cho, ...
Nature communications 6 (1), 8227, 2015
72015
Discovery of SNP markers in expressed genes of hazelnut
ER Rowley, HD Priest, R Shen, WK Wong, TC Mockler, DW Bryant, ...
International Symposium on Molecular Markers in Horticulture 859, 289-294, 2009
72009
Transcriptome analysis of ciliary-dependent MCH signaling in differentiating 3T3-L1 pre-adipocytes
LB Cook, HD Ophardt, R Shen, BH Pratt, LA Galbier
Scientific Reports 11 (1), 4880, 2021
52021
Identification of Long non-coding RNAs expressed during early adipogenesis
R Shen, RA Soeder, HD Ophardt, PJ Giangrasso, LB Cook
OnLine Journal of Biological Sciences 19 (4), 2019
22019
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