| The RAST Server: rapid annotations using subsystems technology RK Aziz, D Bartels, AA Best, M DeJongh, T Disz, RA Edwards, K Formsma, ... BMC genomics 9, 1-15, 2008 | 11656 | 2008 |
| High-throughput generation, optimization and analysis of genome-scale metabolic models CS Henry, M DeJongh, AA Best, PM Frybarger, B Linsay, RL Stevens Nature biotechnology 28 (9), 977-982, 2010 | 1171 | 2010 |
| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1034 | 2018 |
| Genomic Minimalism in the Early Diverging Intestinal Parasite Giardia lamblia HG Morrison, AG McArthur, FD Gillin, SB Aley, RD Adam, GJ Olsen, ... Science 317 (5846), 1921-1926, 2007 | 952 | 2007 |
| Toward the automated generation of genome-scale metabolic networks in the SEED M DeJongh, K Formsma, P Boillot, J Gould, M Rycenga, A Best BMC bioinformatics 8, 1-17, 2007 | 173 | 2007 |
| Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution WH Pope, D Jacobs-Sera, DA Russell, CL Peebles, Z Al-Atrache, ... PloS one 6 (1), e16329, 2011 | 169 | 2011 |
| Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED S Devoid, R Overbeek, M DeJongh, V Vonstein, AA Best, C Henry Systems metabolic engineering: methods and protocols, 17-45, 2013 | 166 | 2013 |
| The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ... Nucleic acids research 49 (D1), D575-D588, 2021 | 163 | 2021 |
| Evolution of eukaryotic transcription: insights from the genome of Giardia lamblia AA Best, HG Morrison, AG McArthur, ML Sogin, GJ Olsen Genome research 14 (8), 1537-1547, 2004 | 114 | 2004 |
| The DOE systems biology knowledgebase (KBase) AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... BioRxiv, 096354, 2016 | 77 | 2016 |
| Characterization of gut microbiome dynamics in developing pekin ducks and impact of management system AA Best, AL Porter, SM Fraley, GS Fraley Frontiers in microbiology 7, 225057, 2017 | 63 | 2017 |
| Inference of the transcriptional regulatory network in Staphylococcus aureus by integration of experimental and genomics-based evidence DA Ravcheev, AA Best, N Tintle, M DeJongh, AL Osterman, PS Novichkov, ... Journal of bacteriology 193 (13), 3228-3240, 2011 | 58 | 2011 |
| Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria IA Rodionova, X Li, V Thiel, S Stolyar, K Stanton, JK Fredrickson, ... Frontiers in microbiology 4, 407, 2013 | 55 | 2013 |
| Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria DA Ravcheev, AA Best, NV Sernova, MD Kazanov, PS Novichkov, ... BMC genomics 14, 1-14, 2013 | 51 | 2013 |
| Connecting genotype to phenotype in the era of high-throughput sequencing CS Henry, R Overbeek, F Xia, AA Best, E Glass, J Gilbert, P Larsen, ... Biochimica et Biophysica Acta (BBA)-General Subjects 1810 (10), 967-977, 2011 | 44 | 2011 |
| Cluster J mycobacteriophages: intron splicing in capsid and tail genes WH Pope, D Jacobs-Sera, AA Best, GW Broussard, PL Connerly, ... PLoS One 8 (7), e69273, 2013 | 42 | 2013 |
| Diversity and versatility of the Thermotoga maritima sugar kinome IA Rodionova, C Yang, X Li, OV Kurnasov, AA Best, AL Osterman, ... Journal of bacteriology 194 (20), 5552-5563, 2012 | 29 | 2012 |
| Increased water contamination and grow-out Pekin duck mortality when raised with water troughs compared to pin-metered water lines using a United States management system A Schenk, AL Porter, E Alenciks, K Frazier, AA Best, SM Fraley, GS Fraley Poultry science 95 (4), 736-748, 2016 | 26 | 2016 |
| Similar subunit architecture of archaeal and eukaryal RNA polymerases AA Best, GJ Olsen FEMS microbiology letters 195 (1), 85-90, 2001 | 21 | 2001 |
| Gene set analyses for interpreting microarray experiments on prokaryotic organisms NL Tintle, AA Best, M DeJongh, D Van Bruggen, F Heffron, S Porwollik, ... BMC bioinformatics 9, 1-14, 2008 | 19 | 2008 |
