Fred P. Davis
Fred P. Davis
Caris Life Sciences
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Cited by
Cited by
Epigenomic signatures of neuronal diversity in the mammalian brain
A Mo, EA Mukamel, FP Davis, C Luo, GL Henry, S Picard, MA Urich, ...
Neuron 86 (6), 1369-1384, 2015
MODBASE: a database of annotated comparative protein structure models and associated resources
U Pieper, N Eswar, FP Davis, H Braberg, MS Madhusudhan, A Rossi, ...
Nucleic acids research 34 (suppl_1), D291-D295, 2006
A structural perspective on protein–protein interactions
RB Russell, F Alber, P Aloy, FP Davis, D Korkin, M Pichaud, M Topf, A Sali
Current opinion in structural biology 14 (3), 313-324, 2004
Developmental acquisition of regulomes underlies innate lymphoid cell functionality
HY Shih, G Sciumè, Y Mikami, L Guo, HW Sun, SR Brooks, JF Urban, ...
Cell 165 (5), 1120-1133, 2016
MODBASE, a database of annotated comparative protein structure models, and associated resources
U Pieper, N Eswar, H Braberg, MS Madhusudhan, FP Davis, AC Stuart, ...
Nucleic acids research 32 (suppl_1), D217-D222, 2004
PIBASE: a comprehensive database of structurally defined protein interfaces
FP Davis, A Sali
Bioinformatics 21 (9), 1901-1907, 2005
Neuropeptide CGRP limits group 2 innate lymphoid cell responses and constrains type 2 inflammation
H Nagashima, T Mahlakõiv, HY Shih, FP Davis, F Meylan, Y Huang, ...
Immunity 51 (4), 682-695. e6, 2019
A genetic, genomic, and computational resource for exploring neural circuit function
FP Davis, A Nern, S Picard, MB Reiser, GM Rubin, SR Eddy, GL Henry
Elife 9, e50901, 2020
Host–pathogen protein interactions predicted by comparative modeling
FP Davis, DT Barkan, N Eswar, JH McKerrow, A Sali
Protein Science 16 (12), 2585-2596, 2007
Cell type–specific genomics of Drosophila neurons
GL Henry, FP Davis, S Picard, SR Eddy
Nucleic acids research 40 (19), 9691-9704, 2012
BACH2 immunodeficiency illustrates an association between super-enhancers and haploinsufficiency
B Afzali, J Grönholm, J Vandrovcova, C O'Brien, HW Sun, I Vanderleyden, ...
Nature immunology 18 (7), 813-823, 2017
Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report
D Kim, T Kobayashi, B Voisin, JH Jo, K Sakamoto, SP Jin, M Kelly, ...
Nature medicine 26 (2), 236-243, 2020
Epigenomic landscapes of retinal rods and cones
A Mo, C Luo, FP Davis, EA Mukamel, GL Henry, JR Nery, MA Urich, ...
Elife 5, e11613, 2016
NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species
GF Striedter, TG Belgard, CC Chen, FP Davis, BL Finlay, O Güntürkün, ...
Brain, Behavior and Evolution 83 (1), 1-8, 2014
Subset-and tissue-defined STAT5 thresholds control homeostasis and function of innate lymphoid cells
AV Villarino, G Sciumè, FP Davis, S Iwata, B Zitti, GW Robinson, ...
Journal of Experimental Medicine 214 (10), 2999-3014, 2017
The transcription factor T-bet limits amplification of type I IFN transcriptome and circuitry in T helper 1 cells
S Iwata, Y Mikami, HW Sun, SR Brooks, D Jankovic, K Hirahara, ...
Immunity 46 (6), 983-991. e4, 2017
Protein complex compositions predicted by structural similarity
FP Davis, H Braberg, MY Shen, U Pieper, A Sali, MS Madhusudhan
Nucleic acids research 34 (10), 2943-2952, 2006
Retinoic acid receptor alpha represses a Th9 transcriptional and epigenomic program to reduce allergic pathology
DM Schwartz, TK Farley, N Richoz, C Yao, HY Shih, F Petermann, ...
Immunity 50 (1), 106-120. e10, 2019
The optimal size of a globular protein domain: A simple sphere-packing model
M Shen, FP Davis, A Sali
Chemical Physics Letters 405 (1-3), 224-228, 2005
A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency
L Xie, SE Torigoe, J Xiao, DH Mai, L Li, FP Davis, P Dong, H Marie-Nelly, ...
Genes & development 31 (17), 1795-1808, 2017
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