Niall Haslam

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Denis ShieldsProfessor of Clinical Bioinformatics, University College DublinVerified email at ucd.ie
Norman E. DaveyInstitute Of Cancer Research, LondonVerified email at icr.ac.uk
Toby GibsonEMBLVerified email at embl.de
Gianluca PollastriAssociate Professor, University College DublinVerified email at ucd.ie
Gerald WeberLecturer, Federal University of Minas Gerais, BrazilVerified email at ufmg.br
Cameron NeylonCentre for Culture and Technology, Curtin UniversityVerified email at cameronneylon.net
Jonathan EssexProfessor of Computational Systems Chemistry, University of SouthamptonVerified email at soton.ac.uk
Catherine MooneyProfessor, UCD School of Computer Science, University College DublinVerified email at ucd.ie
Adam Prugel-BennettUniversity of SouthamptonVerified email at ecs.soton.ac.uk
Aidan BuddTrainer, EMBO Solutions GmbHVerified email at earlham.ac.uk
Richard J EdwardsOceans Institute, University of Western AustraliaVerified email at uwa.edu.au
Nigel BrownCEITEC, Masaryk University, Brno, Czech RepublicVerified email at ceitec.muni.cz
Kate GouldGarvan Institute of Medical ResearchVerified email at garvan.org.au
ahmed sayadiBioinformatics Research, Uppsala universityVerified email at ebc.uu.se
Robert J. WeatherittEMBL Australia and Garvan Institute of Medical ResearchVerified email at emblaustralia.org
mark bradleyVerified email at ed.ac.uk
KEVIN O'BRIENUniversity College DublinVerified email at ucd.ie
Lars Juhl JensenUniversity of CopenhagenVerified email at cpr.ku.dk
Anthony J. ChubbPhD Programme manager, RCSIVerified email at rcsi.ie
Sandra OrchardProtein Function Content Team Leader, EMBL-EBIVerified email at ebi.ac.uk

Niall Haslam

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Bioinformatics machine learning complex systems image analysis


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Towards the improved discovery and design of functional peptides: common features of diverse classes permit generalized prediction of bioactivity C Mooney, NJ Haslam, G Pollastri, DC Shields Public Library of Science 7 (10), e45012, 2012	464	2012
Understanding eukaryotic linear motifs and their role in cell signaling and regulation F Diella, N Haslam, C Chica, A Budd, S Michael, NP Brown, G Trave, ... Front Biosci 13 (6580), 603, 2008	390	2008
ELM—the database of eukaryotic linear motifs H Dinkel, S Michael, RJ Weatheritt, NE Davey, K Van Roey, B Altenberg, ... Nucleic acids research 40 (D1), D242-D251, 2012	377	2012
ELM: the status of the 2010 eukaryotic linear motif resource CM Gould, F Diella, A Via, P Puntervoll, C Gemünd, ... Nucleic acids research 38 (suppl_1), D167-D180, 2010	300	2010
An analysis of the feasibility of short read sequencing N Whiteford, N Haslam, G Weber, A Prügel-Bennett, JW Essex, PL Roach, ... Nucleic acids research 33 (19), e171-e171, 2005	184	2005
SLiMSearch 2.0: biological context for short linear motifs in proteins NE Davey, NJ Haslam, DC Shields, RJ Edwards Nucleic acids research 39 (suppl_2), W56-W60, 2011	92	2011
Prediction of short linear protein binding regions C Mooney, G Pollastri, DC Shields, NJ Haslam Journal of molecular biology 415 (1), 193-204, 2012	90	2012
SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs NE Davey, NJ Haslam, DC Shields, RJ Edwards Nucleic acids research 38 (suppl_2), W534-W539, 2010	85	2010
PeptideLocator: prediction of bioactive peptides in protein sequences C Mooney, NJ Haslam, TA Holton, G Pollastri, DC Shields Bioinformatics 29 (9), 1120-1126, 2013	82	2013
Thermal equivalence of DNA duplexes without calculation of melting temperature G Weber, N Haslam, N Whiteford, A Prügel-Bennett, JW Essex, C Neylon Nature Physics 2 (1), 55-59, 2006	57	2006
Minimum information about a protein affinity reagent (MIAPAR) J Bourbeillon, S Orchard, I Benhar, C Borrebaeck, A De Daruvar, S Dübel, ... Nature biotechnology 28 (7), 650-653, 2010	51	2010
Thermal equivalence of DNA duplexes for probe design G Weber, N Haslam, JW Essex, C Neylon Journal of Physics: Condensed Matter 21 (3), 034106, 2008	49	2008
A community standard format for the representation of protein affinity reagents DE Gloriam, S Orchard, D Bertinetti, E Björling, E Bongcam-Rudloff, ... Molecular & Cellular Proteomics 9 (1), 1-10, 2010	41	2010
Profile-based short linear protein motif discovery NJ Haslam, DC Shields Bmc Bioinformatics 13, 1-9, 2012	21	2012
Peptide-binding domains: are limp handshakes safest? NJ Haslam, DC Shields Science Signaling 5 (243), pe40-pe40, 2012	19	2012
SLiMSearch: a webserver for finding novel occurrences of short linear motifs in proteins, incorporating sequence context NE Davey, NJ Haslam, DC Shields, RJ Edwards Pattern Recognition in Bioinformatics: 5th IAPR International Conference …, 2010	14	2010
Visualising the repeat structure of genomic sequences N Whiteford, N Haslam, G Weber, A Prugel-Bennett, J Essex, C Neylon Complex Systems 17 (4), 381-398, 2008	14	2008
SLiMScape: a protein short linear motif analysis plugin for Cytoscape KT O’Brien, NJ Haslam, DC Shields BMC bioinformatics 14, 1-3, 2013	12	2013
Optimal probe length varies for targets with high sequence variation: implications for probe library design for resequencing highly variable genes NJ Haslam, NE Whiteford, G Weber, A Prügel-Bennett, JW Essex, ... Plos one 3 (6), e2500, 2008	10	2008
EpiC: an open resource for exploring epitopes to aid antibody-based experiments NJ Haslam, TJ Gibson Journal of proteome research 9 (7), 3759-3763, 2010	9	2010

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