Jan Funke
Jan Funke
HHMI Janelia Research Campus
Verified email at janelia.hhmi.org - Homepage
Title
Cited by
Cited by
Year
Efficient automatic 3D-reconstruction of branching neurons from EM data
J Funke, B Andres, FA Hamprecht, A Cardona, M Cook
2012 IEEE Conference on Computer Vision and Pattern Recognition, 1004-1011, 2012
742012
Large Scale Image Segmentation with Structured Loss based Deep Learning for Connectome Reconstruction
J Funke, FD Tschopp, W Grisaitis, A Sheridan, C Singh, S Saalfeld, ...
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2018
472018
Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems
F Tschopp, JNP Martel, SC Turaga, M Cook, J Funke
ISBI, 1225-1228, 2016
442016
Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine
F Jug, T Pietzsch, D Kainmüller, J Funke, M Kaiser, E van Nimwegen, ...
Bayesian and grAphical Models for Biomedical Imaging, 25-36, 2014
312014
Accurate and linear time pose estimation from points and lines
A Vakhitov, J Funke, F Moreno-Noguer
European Conference on Computer Vision, 583-599, 2016
262016
Learning to segment: Training hierarchical segmentation under a topological loss
J Funke, FA Hamprecht, C Zhang
International Conference on Medical Image Computing and Computer-Assisted …, 2015
212015
A framework for evaluating visual slam
J Funke, T Pietzsch
Proceedings of the British Machine Vision Conference (BMVC) 6, 2009
192009
A deep structured learning approach towards automating connectome reconstruction from 3d electron micrographs
J Funke, FD Tschopp, W Grisaitis, A Sheridan, C Singh, S Saalfeld, ...
arXiv preprint arXiv:1709.02974, 2017
162017
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain
L Heinrich, J Funke, C Pape, J Nunez-Iglesias, S Saalfeld
International Conference on Medical Image Computing and Computer-Assisted …, 2018
152018
Candidate sampling for neuron reconstruction from anisotropic electron microscopy volumes
J Funke, JNP Martel, S Gerhard, B Andres, DC Cireşan, A Giusti, ...
International Conference on Medical Image Computing and Computer-Assisted …, 2014
132014
Ted: A tolerant edit distance for segmentation evaluation
J Funke, J Klein, F Moreno-Noguer, A Cardona, M Cook
Methods 115, 119-127, 2017
122017
Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain
A Kreshuk, J Funke, A Cardona, FA Hamprecht
International Conference on Medical Image Computing and Computer-Assisted …, 2015
112015
Segmented anisotropic ssTEM dataset of neural tissue
S Gerhard, J Funke, J Martel, A Cardona, R Fetter
figshare, 0-0, 2013
112013
Analyzing image segmentation for connectomics
SM Plaza, J Funke
Frontiers in neural circuits 12, 102, 2018
62018
Synaptic partner prediction from point annotations in insect brains
J Buhmann, R Krause, RC Lentini, N Eckstein, M Cook, S Turaga, J Funke
International Conference on Medical Image Computing and Computer-Assisted …, 2018
62018
Multi-hypothesis crf-segmentation of neural tissue in anisotropic em volumes
J Funke, B Andres, F Hamprecht, A Cardona, M Cook
arXiv preprint arXiv:1109.2449, 2011
52011
A benchmark for epithelial cell tracking
J Funke, L Mais, A Champion, N Dye, D Kainmueller
Proceedings of the European Conference on Computer Vision (ECCV), 0-0, 2018
32018
Reconstruction of motor control circuits in adult Drosophila using automated transmission electron microscopy
JT Maniates-Selvin, DGC Hildebrand, BJ Graham, AT Kuan, LA Thomas, ...
bioRxiv, 2020
22020
Automatic Neuron Reconstruction from Anisotropic Electron Microscopy Volumes
J Funke
ETH Zurich, 2014
22014
The candidate multi-cut for cell segmentation
J Funke, C Zhang, T Pietzsch, MAG Ballester, S Saalfeld
2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018 …, 2018
12018
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