Carlos F. Lopez
Carlos F. Lopez
Assistant Professor of Biochemistry, Vanderbilt University
Verified email at vanderbilt.edu - Homepage
Title
Cited by
Cited by
Year
Coarse grain models and the computer simulation of soft materials
SO Nielsen, CF Lopez, G Srinivas, ML Klein
Journal of Physics: Condensed Matter 16 (15), R481, 2004
5422004
Understanding nature's design for a nanosyringe
CF Lopez, SO Nielsen, PB Moore, ML Klein
Proceedings of the National Academy of Sciences 101 (13), 4431-4434, 2004
3202004
Hydrophobicity of protein surfaces: Separating geometry from chemistry
N Giovambattista, CF Lopez, PJ Rossky, PG Debenedetti
Proceedings of the National Academy of Sciences 105 (7), 2274-2279, 2008
2412008
Dynamical properties of a hydrated lipid bilayer from a multinanosecond molecular dynamics simulation
PB Moore, CF Lopez, ML Klein
Biophysical journal 81 (5), 2484-2494, 2001
1692001
Programming biological models in Python using PySB
CF Lopez, JL Muhlich, JA Bachman, PK Sorger
Molecular systems biology 9 (1), 646, 2013
1602013
Hydrogen bonding structure and dynamics of water at the dimyristoylphosphatidylcholine lipid bilayer surface from a molecular dynamics simulation
CF Lopez, SO Nielsen, ML Klein, PB Moore
The Journal of Physical Chemistry B 108 (21), 6603-6610, 2004
1602004
A coarse grain model for n-alkanes parameterized from surface tension data
SO Nielsen, CF Lopez, G Srinivas, ML Klein
The Journal of chemical physics 119 (14), 7043-7049, 2003
1392003
Computer simulation studies of biomembranes using a coarse grain model
CF Lopez, PB Moore, JC Shelley, MY Shelley, ML Klein
Computer Physics Communications 147 (1-2), 1-6, 2002
1212002
Rule‐based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems
LA Chylek, LA Harris, CS Tung, JR Faeder, CF Lopez, WS Hlavacek
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 6 (1), 13-36, 2014
1162014
Mechanistic elements of protein cold denaturation
CF Lopez, RK Darst, PJ Rossky
The Journal of Physical Chemistry B 112 (19), 5961-5967, 2008
962008
Molecular dynamics investigations of lipid Langmuir monolayers using a coarse-grain model
SO Nielsen, CF Lopez, PB Moore, JC Shelley, ML Klein
The Journal of Physical Chemistry B 107 (50), 13911-13917, 2003
702003
Probing membrane insertion activity of antimicrobial polymers via coarse-grain molecular dynamics
CF Lopez, SO Nielsen, G Srinivas, WF DeGrado, ML Klein
Journal of chemical theory and computation 2 (3), 649-655, 2006
692006
Structure and dynamics of model pore insertion into a membrane
CF Lopez, SO Nielsen, B Ensing, PB Moore, ML Klein
Biophysical journal 88 (5), 3083-3094, 2005
682005
Transmembrane peptide-induced lipid sorting and mechanism of Lα-to-inverted phase transition using coarse-grain molecular dynamics
SO Nielsen, CF Lopez, I Ivanov, PB Moore, JC Shelley, ML Klein
Biophysical journal 87 (4), 2107-2115, 2004
622004
An unbiased metric of antiproliferative drug effect in vitro
LA Harris, PL Frick, SP Garbett, KN Hardeman, BB Paudel, CF Lopez, ...
Nature methods 13 (6), 497-500, 2016
612016
Molecular dynamics investigation of membrane-bound bundles of the channel-forming transmembrane domain of viral protein U from the human immunodeficiency virus HIV-1
CF Lopez, M Montal, JK Blasie, ML Klein, PB Moore
Biophysical journal 83 (3), 1259-1267, 2002
612002
Self-assembly of a phospholipid Langmuir monolayer using coarse-grained molecular dynamics simulations
CF Lopez, SO Nielsen, PB Moore, JC Shelley, ML Klein
Journal of Physics: Condensed Matter 14 (40), 9431, 2002
532002
Modeling surfactant adsorption on hydrophobic surfaces
SO Nielsen, G Srinivas, CF Lopez, ML Klein
Physical review letters 94 (22), 228301, 2005
402005
Competition and allostery govern substrate selectivity of cyclooxygenase-2
MM Mitchener, DJ Hermanson, EM Shockley, HA Brown, CW Lindsley, ...
Proceedings of the National Academy of Sciences 112 (40), 12366-12371, 2015
242015
Tubular nanostructures
M Klein, C Lopez
US Patent App. 10/446,622, 2004
242004
The system can't perform the operation now. Try again later.
Articles 1–20