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Paul Martin Murphy
Paul Martin Murphy
Verified email at ucsd.edu
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Cited by
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Year
RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite
SJ Fleishman, A Leaver-Fay, JE Corn, EM Strauch, SD Khare, N Koga, ...
PloS one 6 (6), e20161, 2011
5892011
Automated prediction of CASP‐5 structures using the Robetta server
D Chivian, DE Kim, L Malmström, P Bradley, T Robertson, P Murphy, ...
Proteins: Structure, Function, and Bioinformatics 53 (S6), 524-533, 2003
3682003
Rosetta predictions in CASP5: successes, failures, and prospects for complete automation
P Bradley, D Chivian, J Meiler, KMS Misura, CA Rohl, WR Schief, ...
Proteins: Structure, Function, and Bioinformatics 53 (S6), 457-468, 2003
2482003
Optimization of the in-silico-designed kemp eliminase KE70 by computational design and directed evolution
O Khersonsky, D Röthlisberger, AM Wollacott, P Murphy, O Dym, S Albeck, ...
Journal of molecular biology 407 (3), 391-412, 2011
1982011
Alteration of enzyme specificity by computational loop remodeling and design
PM Murphy, JM Bolduc, JL Gallaher, BL Stoddard, D Baker
Proceedings of the National Academy of Sciences 106 (23), 9215-9220, 2009
1512009
The X-ray structure of the type II secretion system complex formed by the N-terminal domain of EpsE and the cytoplasmic domain of EpsL of Vibrio cholerae
J Abendroth, P Murphy, M Sandkvist, M Bagdasarian, WGJ Hol
Journal of molecular biology 348 (4), 845-855, 2005
1232005
Associations between histologic features of nonalcoholic fatty liver disease (NAFLD) and quantitative diffusion‐weighted MRI measurements in adults
P Murphy, J Hooker, B Ang, T Wolfson, A Gamst, M Bydder, M Middleton, ...
Journal of Magnetic Resonance Imaging 41 (6), 1629-1638, 2015
752015
Prediction of structures of multidomain proteins from structures of the individual domains
AM Wollacott, A Zanghellini, P Murphy, D Baker
Protein science 16 (2), 165-175, 2007
672007
Cross-sectional investigation of correlation between hepatic steatosis and IVIM perfusion on MR imaging
JT Lee, J Liau, P Murphy, ME Schroeder, CB Sirlin, M Bydder
Magnetic resonance imaging 30 (4), 572-578, 2012
492012
Effect of shelter-in-place on emergency department radiology volumes during the COVID-19 pandemic
R Houshyar, K Tran-Harding, J Glavis-Bloom, M Nguyentat, J Mongan, ...
Emergency radiology 27, 781-784, 2020
432020
Surface-exposed hemophilic mutations across the factor VIII C2 domain have variable effects on stability and binding activities
PC Spiegel, P Murphy, BL Stoddard
Journal of Biological Chemistry 279 (51), 53691-53698, 2004
402004
Liver histology and diffusion‐weighted MRI in children with nonalcoholic fatty liver disease: A MAGNET study
P Manning, P Murphy, K Wang, J Hooker, T Wolfson, MS Middleton, ...
Journal of Magnetic Resonance Imaging 46 (4), 1149-1158, 2017
322017
Error model for reduction of cardiac and respiratory motion effects in quantitative liver DW‐MRI
P Murphy, T Wolfson, A Gamst, C Sirlin, M Bydder
Magnetic resonance in medicine 70 (5), 1460-1469, 2013
292013
ACR ultrasound liver reporting and data system: multicenter assessment of clinical performance at one year
JD Millet, A Kamaya, HH Choi, N Dahiya, PM Murphy, MZ Naveed, ...
Journal of the American College of Radiology 16 (12), 1656-1662, 2019
282019
A case of faculty collaboration for music education curricular change
L Thornton, P Murphy, S Hamilton
Journal of Music Teacher Education 13 (2), 34-40, 2004
272004
Longitudinal evolution of CT and MRI LI-RADS v2014 category 1, 2, 3, and 4 observations
CW Hong, CC Park, A Mamidipalli, JC Hooker, S Fazeli Dehkordy, ...
European radiology 29, 5073-5081, 2019
242019
Computational design of orthogonal nucleoside kinases
L Liu, P Murphy, D Baker, S Lutz
Chemical communications 46 (46), 8803-8805, 2010
172010
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112022
Image annotation by eye tracking: Accuracy and precision of centerlines of obstructed small-bowel segments placed using eye trackers
A Lucas, K Wang, C Santillan, A Hsiao, CB Sirlin, PM Murphy
Journal of digital imaging 32, 855-864, 2019
62019
D. W. Aha
PM Murphy
UCI Repository of Machine Learning Databases, 1994
51994
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