| Editing DNA methylation in the mammalian genome XS Liu, H Wu, X Ji, Y Stelzer, X Wu, S Czauderna, J Shu, D Dadon, ... Cell 167 (1), 233-247. e17, 2016 | 1231 | 2016 |
| Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming G Schiebinger*, J Shu*+, M Tabaka*, B Cleary*, V Subramanian, ... Cell 176 (4), 928-943. e22, 2019 | 677 | 2019 |
| Human hepatocytes with drug metabolic function induced from fibroblasts by lineage reprogramming Y Du, J Wang, J Jia, N Song, C Xiang, J Xu, Z Hou, X Su, B Liu, T Jiang, ... Cell stem cell 14 (3), 394-403, 2014 | 355 | 2014 |
| Induction of pluripotency in mouse somatic cells with lineage specifiers J Shu, C Wu, Y Wu, Z Li, S Shao, W Zhao, X Tang, H Yang, L Shen, X Zuo, ... Cell 153 (5), 963-975, 2013 | 346 | 2013 |
| Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature medicine 27 (3), 546-559, 2021 | 295 | 2021 |
| Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and … C Muus, MD Luecken, G Eraslan, A Waghray, G Heimberg, L Sikkema, ... BioRxiv, 2020.04. 19.049254, 2020 | 255 | 2020 |
| Human iPSC-derived microglia assume a primary microglia-like state after transplantation into the neonatal mouse brain DS Svoboda, MI Barrasa, J Shu, R Rietjens, S Zhang, M Mitalipova, ... Proceedings of the National Academy of Sciences 116 (50), 25293-25303, 2019 | 121 | 2019 |
| Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming G Schiebinger, J Shu, M Tabaka, B Cleary, V Subramanian, A Solomon, ... BioRxiv, 191056, 2017 | 73 | 2017 |
| GATA family members as inducers for cellular reprogramming to pluripotency J Shu, K Zhang, M Zhang, A Yao, S Shao, F Du, C Yang, W Chen, C Wu, ... Cell Research 25 (2), 169-180, 2015 | 66 | 2015 |
| ClusterMap for multi-scale clustering analysis of spatial gene expression Y He, X Tang, J Huang, J Ren, H Zhou, K Chen, A Liu, H Shi, Z Lin, Q Li, ... Nature communications 12 (1), 5909, 2021 | 59 | 2021 |
| Lineage specifiers: new players in the induction of pluripotency J Shu, H Deng Genomics, proteomics & bioinformatics 11 (5), 259-263, 2013 | 20 | 2013 |
| and The Human Cell Atlas Lung Biological Network C Muus, MD Luecken, G Eraslan, NHLBI LungMAP Consortium Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and …, 2021 | 16 | 2021 |
| Raman2RNA: Live-cell label-free prediction of single-cell RNA expression profiles by Raman microscopy KJ Kobayashi-Kirschvink, S Gaddam, T James-Sorenson, E Grody, ... bioRxiv, 2021.11. 30.470655, 2021 | 15 | 2021 |
| Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF) C Comiter, ED Vaishnav, M Ciampricotti, B Li, Y Yang, SJ Rodig, M Turner, ... BioRxiv, 2023.03. 21.533680, 2023 | 13 | 2023 |
| ATR inhibition induces synthetic lethality in mismatch repair-deficient cells and augments immunotherapy M Wang, X Ran, W Leung, A Kawale, S Saxena, J Ouyang, PS Patel, ... Genes & Development 37 (19-20), 929-943, 2023 | 4 | 2023 |
| Methods and systems for reconstruction of developmental landscapes by optimal transport analysis G Schiebinger, J Shu, M Tabaka, B Cleary, A Regev, ES Lander, ... US Patent App. 16/648,715, 2020 | 3 | 2020 |
| Prediction of single-cell RNA expression profiles in live cells by Raman microscopy with Raman2RNA KJ Kobayashi-Kirschvink, CS Comiter, S Gaddam, T Joren, EI Grody, ... Nature Biotechnology, 1-9, 2024 | 2 | 2024 |
| Bering: joint cell segmentation and annotation for spatial transcriptomics with transferred graph embeddings K Jin, Z Zhang, K Zhang, F Viggiani, C Callahan, J Tang, BJ Aronow, ... bioRxiv, 2023 | | 2023 |
| Raman2RNA: Live-cell label-free prediction of single-cell expression profiles by Raman microscopy (Conference Presentation) KJ Kobayashi-Kirschvink, CS Comiter, K Zhang, JW Kang, J Shu, P So, ... Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XXI …, 2023 | | 2023 |
