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Paulo Cesar Telles de Souza
Paulo Cesar Telles de Souza
Researcher, MMSB-UMR 5086 (CNRS/Université de Lyon)
Verified email at ibcp.fr - Homepage
Title
Cited by
Cited by
Year
Computational modeling of realistic cell membranes
SJ Marrink, V Corradi, PCT Souza, HI Ingolfsson, DP Tieleman, ...
Chemical reviews 119 (9), 6184-6226, 2019
3372019
Enhancing Molecular n‐Type Doping of Donor–Acceptor Copolymers by Tailoring Side Chains
J Liu, L Qiu, R Alessandri, X Qiu, G Portale, JJ Dong, W Talsma, G Ye, ...
Advanced Materials 30 (7), 1704630, 2018
1922018
Martini 3: a general purpose force field for coarse-grained molecular dynamics
PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ...
Nature methods 18 (4), 382-388, 2021
1802021
Medium chain fatty acids are selective peroxisome proliferator activated receptor (PPAR) γ activators and pan-PPAR partial agonists
MV Liberato, AS Nascimento, SD Ayers, JZ Lin, A Cvoro, RL Silveira, ...
PloS one 7 (5), e36297, 2012
1742012
GQ-16, a novel peroxisome proliferator-activated receptor γ (PPARγ) ligand, promotes insulin sensitization without weight gain
AA Amato, S Rajagopalan, JZ Lin, BM Carvalho, ACM Figueira, J Lu, ...
Journal of Biological Chemistry 287 (33), 28169-28179, 2012
1152012
Pitfalls of the Martini Model
R Alessandri, PCT Souza, S Thallmair, MN Melo, AH de Vries, SJ Marrink
Journal of Chemical Theory and Computation 15 (10), 5448-5460, 2019
1132019
CHARMM‐GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides
PC Hsu, BMH Bruininks, D Jefferies, P Cesar Telles de Souza, J Lee, ...
Journal of computational chemistry 38 (27), 2354-2363, 2017
1032017
Molecular mechanism of peroxisome proliferator-activated receptor α activation by WY14643: a new mode of ligand recognition and receptor stabilization
A Bernardes, PCT Souza, JRC Muniz, CG Ricci, SD Ayers, NM Parekh, ...
Journal of molecular biology 425 (16), 2878-2893, 2013
982013
Protein–ligand binding with the coarse-grained Martini model
PCT Souza, S Thallmair, P Conflitti, C Ramírez-Palacios, R Alessandri, ...
Nature communications 11 (1), 1-11, 2020
772020
Analysis of agonist and antagonist effects on thyroid hormone receptor conformation by hydrogen/deuterium exchange
ACM Figueira, DM Saidemberg, PCT Souza, L Martínez, TS Scanlan, ...
Molecular Endocrinology 25 (1), 15-31, 2011
512011
Identification of a new hormone-binding site on the surface of thyroid hormone receptor
PCT Souza, AC Puhl, L Martínez, R Aparício, AS Nascimento, ...
Molecular Endocrinology 28 (4), 534-545, 2014
422014
High performance collision cross section calculation—HPCCS
L Zanotto, G Heerdt, PCT Souza, G Araujo, MS Skaf
Journal of computational chemistry 39 (21), 1675-1681, 2018
412018
A practical view of the martini force field
BMH Bruininks, PCT Souza, SJ Marrink
Biomolecular Simulations, 105-127, 2019
34*2019
An alternative conformation of ERβ bound to estradiol reveals H12 in a stable antagonist position
PCT Souza, LC Textor, DC Melo, AS Nascimento, MS Skaf, I Polikarpov
Scientific reports 7 (1), 1-11, 2017
332017
Bottom-up fabrication of a proteasome–nanopore that unravels and processes single proteins
S Zhang, G Huang, RCA Versloot, BMH Bruininks, PCT de Souza, ...
Nature chemistry 13 (12), 1192-1199, 2021
30*2021
Titratable Martini model for constant pH simulations
F Grünewald, PCT Souza, H Abdizadeh, J Barnoud, AH de Vries, ...
The Journal of chemical physics 153 (2), 024118, 2020
302020
Isomeric separation of cannabinoids by UPLC combined with ionic mobility mass spectrometry (TWIM-MS)—Part I
LV Tose, NA Santos, RRT Rodrigues, M Murgu, AF Gomes, ...
International Journal of Mass Spectrometry 418, 112-121, 2017
262017
An allosteric pathway in copper, zinc superoxide dismutase unravels the molecular mechanism of the G93A amyotrophic lateral sclerosis-linked mutation
PCT Souza, S Thallmair, SJ Marrink, R Mera-Adasme
The journal of physical chemistry letters 10 (24), 7740-7744, 2019
252019
A molecular view on the escape of lipoplexed DNA from the endosome
BMH Bruininks, PCT Souza, H Ingolfsson, SJ Marrink
Elife 9, e52012, 2020
242020
Martini coarse-grained models of imidazolium-based ionic liquids: from nanostructural organization to liquid-liquid extraction
LI Vazquez-Salazar, M Selle, AH De Vries, SJ Marrink, PCT Souza
Green Chemistry, 2020
222020
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