Zhizhuo Zhang
Zhizhuo Zhang
Postdoctoral Research Associate, MIT
Verifierad e-postadress på mit.edu - Startsida
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Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317, 2015
36072015
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ...
Cell 148 (1-2), 84-98, 2012
10642012
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126, 2013
2932013
Telomerase directly regulates NF-κB-dependent transcription
A Ghosh, G Saginc, SC Leow, E Khattar, EM Shin, TD Yan, M Wong, ...
Nature cell biology 14 (12), 1270, 2012
2422012
3D chromosome modeling with semi-definite programming and Hi-C data
ZZ Zhang, G Li, KC Toh, WK Sung
Journal of computational biology 20 (11), 831-846, 2013
1062013
CENTDIST: discovery of co-associated factors by motif distribution
Z Zhang, CW Chang, WL Goh, WK Sung, E Cheung
Nucleic acids research 39 (suppl_2), W391-W399, 2011
622011
The Brm-HDAC3-Erm repressor complex suppresses dedifferentiation in Drosophila type II neuroblast lineages
CT Koe, S Li, F Rossi, JJL Wong, Y Wang, Z Zhang, K Chen, SS Aw, ...
Elife 3, e01906, 2014
452014
Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci
V Onuchic, E Lurie, I Carrero, P Pawliczek, RY Patel, J Rozowsky, ...
Science 361 (6409), eaar3146, 2018
362018
Inference of spatial organizations of chromosomes using semi-definite embedding approach and Hi-C data
ZZ Zhang, G Li, KC Toh, WK Sung
Annual international conference on research in computational molecular …, 2013
302013
An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells
Z Zhang, KR Chng, S Lingadahalli, Z Chen, MH Liu, HH Do, S Cai, ...
Genome research 29 (2), 223-235, 2019
182019
Integrative analysis of CRISPR/Cas9 target sites in the human HBB gene
Y Luo, D Zhu, Z Zhang, Y Chen, X Sun
BioMed research international 2015, 2015
152015
Simultaneously learning DNA motif along with its position and sequence rank preferences through expectation maximization algorithm
ZZ Zhang, CW Chang, W Hugo, E Cheung, WK Sung
Journal of Computational Biology 20 (3), 237-248, 2013
142013
Genie: A Secure, Transparent Sharing and Services Platform for Genetic and Health Data
S Zhangy, A Kim, D Liu, SC Nuckchadyy, L Huangy, A Masurkary, ...
arXiv preprint arXiv:1811.01431, 2018
72018
A New Nearest Neighbour Searching Algorithm Based on M2M Model.
YP Zhang, ZZ Zhang, Q Chen
IMECS, 31-37, 2007
62007
A high-throughput screening and computation platform for identifying synthetic promoters with enhanced cell-state specificity (SPECS)
YTTKL Ming-Ru Wu, Lior Nissim, Doron Stupp, Erez Pery, Adina Binder-Nissim ...
Nature Communications 10, 2019
52019
Simultaneously learning DNA motif along with its position and sequence rank preferences through EM algorithm
ZZ Zhang, CW Chang, W Hugo, E Cheung, WK Sung
Annual International Conference on Research in Computational Molecular …, 2012
52012
Ranking potential customers based on group-ensemble
ZZ Zhang, Q Chen, SF Ke, YJ Wu, F Qi, YP Zhang
International Journal of Data Warehousing and Mining (IJDWM) 4 (2), 79-89, 2008
32008
A new randomized parallel dynamic convex hull algorithm based on M2M model
YP Zhang, ZZ Zhang, Q Chen, ZM Zhou, SZ Luo
International Conference on Convergence Technology and Information Convergence, 2007
22007
Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization
D Liu, J Davila-Velderrain, Z Zhang, M Kellis
Nucleic acids research 47 (14), 7235-7246, 2019
12019
Systems and methods for crowdsourcing, analyzing, and/or matching personal data
Z Zhang, M Kellis, D Liu, A Kim, L Huang, S Nuckchady
US Patent App. 16/612,993, 2020
2020
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Artiklar 1–20