Christian Brueffer
Christian Brueffer
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Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
The Sweden Cancerome Analysis Network-Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the …
LH Saal, J Vallon-Christersson, J Häkkinen, C Hegardt, D Grabau, ...
Genome medicine 7 (1), 1-12, 2015
Clinical value of RNA sequencing–based classifiers for prediction of the five conventional breast cancer biomarkers: a report from the population-based multicenter sweden …
C Brueffer, J Vallon-Christersson, D Grabau, A Ehinger, J Häkkinen, ...
JCO Precision Oncology 2, 1-18, 2018
Contralateral breast cancer can represent a metastatic spread of the first primary tumor: determination of clonal relationship between contralateral breast cancers using next …
S Alkner, MHE Tang, C Brueffer, M Dahlgren, Y Chen, E Olsson, C Winter, ...
Breast Cancer Research 17 (1), 1-10, 2015
Remarkable similarities of chromosomal rearrangements between primary human breast cancers and matched distant metastases as revealed by whole-genome sequencing.
ME Tang, M Dahlgren, C Brueffer, T Tjitrowirjo, C Winter, Y Chen, ...
Oncotarget, 2015
TopHat-Recondition: a post-processor for TopHat unmapped reads
C Brueffer, LH Saal
BMC bioinformatics 17 (1), 1-3, 2016
Detection of circulating tumor cells and circulating tumor DNA before and after mammographic breast compression in a cohort of breast cancer patients scheduled for neoadjuvant …
D Förnvik, KE Aaltonen, Y Chen, AM George, C Brueffer, R Rigo, ...
Breast cancer research and treatment 177 (2), 447-455, 2019
precisionFDA Truth Challenge V2: Calling variants from short-and long-reads in difficult-to-map regions
ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ...
bioRxiv, 2020
SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and Therapeutics
HM Rando, CS Greene, MP Robson, SM Boca, N Wellhausen, R Lordan, ...
Manubot, 2020
SVCurator: A Crowdsourcing app to visualize evidence of structural variants for the human genome
LM Chapman, N Spies, P Pai, CS Lim, A Carroll, G Narzisi, CM Watson, ...
BioRxiv, 581264, 2019
Biopython Project Update 2017
S Singh, C Brueffer, P Cock
18th Bioinformatics Open Source Conference, 2017, 2017
Pathogenesis, symptomatology, and transmission of SARS-CoV-2 through analysis of viral genomics and structure
HM Rando, AL MacLean, AJ Lee, S Ray, V Bansal, AN Skelly, E Sell, ...
arXiv preprint arXiv:2102.01521, 2021
Features of increased malignancy in eosinophilic clear cell renal cell carcinoma
H Nilsson, D Lindgren, H Axelson, C Brueffer, LH Saal, J Lundgren, ...
The Journal of pathology 252 (4), 384-397, 2020
The mutational landscape of the SCAN‐B real‐world primary breast cancer transcriptome
C Brueffer, S Gladchuk, C Winter, J Vallon‐Christersson, C Hegardt, ...
EMBO molecular medicine 12 (10), e12118, 2020
On the development and clinical value of RNA-sequencing-based classifiers for prediction of the five conventional breast cancer biomarkers: A report from the population-based …
C Brueffer, J Vallon-Christersson, D Grabau, A Ehinger, J Hakkinen, ...
Cancer Research 78 (4), 2018
Biopython project update 2016
C Brueffer, T Antao, P Cock, E Talevich, M de Hoon, W Arindrarto, ...
Bioinformatics Open Source Conference, 2016, 2016
Quality Control and Analysis of RNA-seq Data from Breast Cancer Tumor Samples
C Brueffer
Lund University, 2013
Identification and Development of Therapeutics for COVID-19
HM Rando, N Wellhausen, S Ghosh, AJ Lee, AA Dattoli, F Hu, JB Byrd, ...
arXiv preprint arXiv:2103.02723, 2021
RNA sequencing for molecular diagnostics in breast cancer
C Brueffer
Lund University, Faculty of Medicine Doctoral Dissertation Series, 2021
Abstract CT074: Pre-existing ESR1 mutations in early-stage primary breast cancer predict failure of endocrine therapy and poor survival
M Dahlgren, AM George, C Brueffer, S Gladchuk, Y Chen, ...
Cancer Research 80 (16 Supplement), CT074-CT074, 2020
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