Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1145 | 2018 |
The Sweden Cancerome Analysis Network-Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the … LH Saal, J Vallon-Christersson, J Häkkinen, C Hegardt, D Grabau, ... Genome medicine 7, 1-12, 2015 | 198 | 2015 |
Clinical value of RNA sequencing–based classifiers for prediction of the five conventional breast cancer biomarkers: a report from the population-based multicenter Sweden … C Brueffer, J Vallon-Christersson, D Grabau, A Ehinger, J Häkkinen, ... JCO Precision Oncology 2, 1-18, 2018 | 168 | 2018 |
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ... Cell genomics 2 (5), 2022 | 143 | 2022 |
Dietary supplements and nutraceuticals under investigation for COVID-19 prevention and treatment R Lordan, HM Rando, CS Greene Msystems 6 (3), 10.1128/msystems. 00122-21, 2021 | 101 | 2021 |
The mutational landscape of the SCAN‐B real‐world primary breast cancer transcriptome C Brueffer, S Gladchuk, C Winter, J Vallon‐Christersson, C Hegardt, ... EMBO molecular medicine 12 (10), e12118, 2020 | 51 | 2020 |
Clinical associations of ESR2 (estrogen receptor beta) expression across thousands of primary breast tumors H Dalal, M Dahlgren, S Gladchuk, C Brueffer, SK Gruvberger-Saal, ... Scientific reports 12 (1), 4696, 2022 | 40 | 2022 |
Contralateral breast cancer can represent a metastatic spread of the first primary tumor: determination of clonal relationship between contralateral breast cancers using next … S Alkner, MHE Tang, C Brueffer, M Dahlgren, Y Chen, E Olsson, C Winter, ... Breast Cancer Research 17, 1-10, 2015 | 39 | 2015 |
Pathogenesis, symptomatology, and transmission of SARS-CoV-2 through analysis of viral genomics and structure HM Rando, AL MacLean, AJ Lee, R Lordan, S Ray, V Bansal, AN Skelly, ... MSystems 6 (5), 10.1128/msystems. 00095-21, 2021 | 37 | 2021 |
Remarkable similarities of chromosomal rearrangements between primary human breast cancers and matched distant metastases as revealed by whole-genome sequencing. ME Tang, M Dahlgren, C Brueffer, T Tjitrowirjo, C Winter, Y Chen, ... Oncotarget, 2015 | 31 | 2015 |
Preexisting Somatic Mutations of Estrogen Receptor Alpha (ESR1) in Early-Stage Primary Breast Cancer M Dahlgren, AM George, C Brueffer, S Gladchuk, Y Chen, ... JNCI Cancer Spectrum 5 (2), pkab028, 2021 | 23 | 2021 |
Identification and development of therapeutics for COVID-19 HM Rando, N Wellhausen, S Ghosh, AJ Lee, AA Dattoli, F Hu, JB Byrd, ... Msystems 6 (6), e00233-21, 2021 | 21 | 2021 |
Detection of circulating tumor cells and circulating tumor DNA before and after mammographic breast compression in a cohort of breast cancer patients scheduled for neoadjuvant … D Förnvik, KE Aaltonen, Y Chen, AM George, C Brueffer, R Rigo, ... Breast Cancer Research and Treatment 177, 447-455, 2019 | 21 | 2019 |
Features of increased malignancy in eosinophilic clear cell renal cell carcinoma H Nilsson, D Lindgren, H Axelson, C Brueffer, LH Saal, J Lundgren, ... The Journal of Pathology 252 (4), 384-397, 2020 | 20 | 2020 |
SARS-CoV-2 and COVID-19: An evolving review of diagnostics and therapeutics HM Rando, CS Greene, MP Robson, SM Boca, N Wellhausen, R Lordan, ... Manubot, 2021 | 12 | 2021 |
TopHat-Recondition: a post-processor for TopHat unmapped reads C Brueffer, LH Saal BMC bioinformatics 17, 1-3, 2016 | 12 | 2016 |
The coming of age of nucleic acid vaccines during COVID-19 HM Rando, R Lordan, L Kolla, E Sell, AJ Lee, N Wellhausen, A Naik, ... Msystems 8 (2), e00928-22, 2023 | 10 | 2023 |
Application of traditional vaccine development strategies to SARS-CoV-2 HM Rando, R Lordan, AJ Lee, A Naik, N Wellhausen, E Sell, L Kolla, ... Msystems 8 (2), e00927-22, 2023 | 10 | 2023 |
A crowdsourced set of curated structural variants for the human genome LM Chapman, N Spies, P Pai, CS Lim, A Carroll, G Narzisi, CM Watson, ... PLoS computational biology 16 (6), e1007933, 2020 | 7 | 2020 |
Preoperative ctDNA levels are associated with poor overall survival in patients with ovarian cancer A Dobilas, Y Chen, C Brueffer, P Leandersson, LH Saal, C Borgfeldt Cancer Genomics & Proteomics 20 (6suppl), 763-770, 2023 | 4 | 2023 |