| LINE-1 protein localization and functional dynamics during the cell cycle P Mita, A Wudzinska, X Sun, J Andrade, S Nayak, DJ Kahler, S Badri, ... Elife 7, e30058, 2018 | 129 | 2018 |
| 4C-ker: a method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments R Raviram, PP Rocha, CL Müller, ER Miraldi, S Badri, Y Fu, E Swanzey, ... PLoS computational biology 12 (3), e1004780, 2016 | 93 | 2016 |
| Dissection of affinity captured LINE-1 macromolecular complexes MS Taylor, I Altukhov, KR Molloy, P Mita, H Jiang, EM Adney, ... elife 7, e30094, 2018 | 77 | 2018 |
| NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains P Lhoumaud, S Badri, J Rodriguez-Hernaez, T Sakellaropoulos, G Sethia, ... Nature communications 10 (1), 4843, 2019 | 69 | 2019 |
| Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions T Jiang, R Raviram, V Snetkova, PP Rocha, C Proudhon, S Badri, ... Nucleic acids research 44 (18), 8714-8725, 2016 | 50 | 2016 |
| Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation M Nishana, C Ha, J Rodriguez-Hernaez, A Ranjbaran, E Chio, EP Nora, ... Genome biology 21, 1-34, 2020 | 48 | 2020 |
| Active and inactive enhancers cooperate to exert localized and long-range control of gene regulation C Proudhon, V Snetkova, R Raviram, C Lobry, S Badri, T Jiang, B Hao, ... Cell reports 15 (10), 2159-2169, 2016 | 48 | 2016 |
| EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation P Lhoumaud, G Sethia, F Izzo, T Sakellaropoulos, V Snetkova, S Vidal, ... Genome biology 20, 1-12, 2019 | 30 | 2019 |
| Targeting the Atf7ip–Setdb1 Complex Augments Antitumor Immunity by Boosting Tumor Immunogenicity H Hu, A Khodadadi-Jamayran, I Dolgalev, H Cho, S Badri, LA Chiriboga, ... Cancer Immunology Research 9 (11), 1298-1315, 2021 | 21 | 2021 |
| Scaffold association factor B (SAFB) is required for expression of prenyltransferases and RAS membrane association M Zhou, L Kuruvilla, X Shi, S Viviano, IM Ahearn, CR Amendola, W Su, ... Proceedings of the National Academy of Sciences 117 (50), 31914-31922, 2020 | 8 | 2020 |
| Identification of new therapeutic targets in CRLF2-overexpressing B-ALL through discovery of TF-gene regulatory interactions S Badri, B Carella, P Lhoumaud, DM Castro, CS Gibbs, R Raviram, ... bioRxiv, 654418, 2019 | 1 | 2019 |
| EpiMethylTag simultaneously detects ATAC-seq or ChIP-seq signals with DNA methylation P Lhoumaud, G Sethia, F Izzo, T Sakellaropoulos, V Snetkova, S Vidal, ... bioRxiv, 549550, 2019 | 1 | 2019 |
| Proteomic analysis of affinity captured LINE-1 macromolecular complexes I Altukhov, MS Taylor, KR Molloy, P Mita, H Jiang, EM Adney, ... Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB …, 2018 | | 2018 |
| Author Correction: Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation M Nishana, C Ha, J Rodriguez-Hernaez, A Ranjbaran, E Chio, EP Nora, ... | | |
| NSD2 overexpression drives clustered chromatin and transcriptional changes in insulated domains P Lhoumaud, S Badri, JR Hernaez, G Sethia, A Kloetgen, MI Cornwell, ... | | |
