Aleksey V Zimin
Aleksey V Zimin
Associate Research Scientist, Department of Biomedical Engineering, Johns Hopkins Unviersity
Verified email at jhu.edu - Homepage
Title
Cited by
Cited by
Year
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-218, 2007
20432007
A whole-genome assembly of the domestic cow, Bos taurus
AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ...
Genome biology 10 (4), 1-10, 2009
11662009
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
KK Dasmahapatra, JR Walters, AD Briscoe, JW Davey, A Whibley, ...
Nature 487 (7405), 94, 2012
9982012
A local ensemble Kalman filter for atmospheric data assimilation
E Ott, BR Hunt, I Szunyogh, AV Zimin, EJ Kostelich, M Corazza, E Kalnay, ...
Tellus A: Dynamic Meteorology and Oceanography 56 (5), 415-428, 2004
9402004
The MaSuRCA genome assembler
AV Zimin, G Marçais, D Puiu, M Roberts, SL Salzberg, JA Yorke
Bioinformatics 29 (21), 2669-2677, 2013
8712013
GAGE: A critical evaluation of genome assemblies and assembly algorithms
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...
Genome research 22 (3), 557-567, 2012
7752012
The Atlantic salmon genome provides insights into rediploidization
S Lien, BF Koop, SR Sandve, JR Miller, MP Kent, T Nome, TR Hvidsten, ...
Nature 533 (7602), 200-205, 2016
6632016
MUMmer4: A fast and versatile genome alignment system
G Marçais, AL Delcher, AM Phillippy, R Coston, SL Salzberg, A Zimin
PLoS computational biology 14 (1), e1005944, 2018
5052018
Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
DB Neale, JL Wegrzyn, KA Stevens, AV Zimin, D Puiu, MW Crepeau, ...
Genome biology 15 (3), 1-13, 2014
4372014
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ...
PLoS biology 8 (9), e1000475, 2010
4192010
Genome sequence of the progenitor of the wheat D genome Aegilops tauschii
MC Luo, YQ Gu, D Puiu, H Wang, SO Twardziok, KR Deal, N Huo, T Zhu, ...
Nature 551 (7681), 498-502, 2017
3392017
Sequencing and assembly of the 22-Gb loblolly pine genome
A Zimin, KA Stevens, MW Crepeau, A Holtz-Morris, M Koriabine, ...
Genetics 196 (3), 875-890, 2014
2832014
Four-dimensional ensemble Kalman filtering
BR Hunt, E Kalnay, EJ Kostelich, E Ott, DJ Patil, T Sauer, I Szunyogh, ...
Tellus A: Dynamic Meteorology and Oceanography 56 (4), 273-277, 2004
2812004
Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)
CD Smith, A Zimin, C Holt, E Abouheif, R Benton, E Cash, V Croset, ...
Proceedings of the National Academy of Sciences 108 (14), 5673-5678, 2011
2732011
Draft genome of the red harvester ant Pogonomyrmex barbatus
CR Smith, CD Smith, HM Robertson, M Helmkampf, A Zimin, M Yandell, ...
Proceedings of the National Academy of Sciences 108 (14), 5667-5672, 2011
2702011
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
AV Zimin, D Puiu, MC Luo, T Zhu, S Koren, G Marçais, JA Yorke, J Dvořák, ...
Genome research 27 (5), 787-792, 2017
2202017
The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum
AV Zimin, D Puiu, R Hall, S Kingan, BJ Clavijo, SL Salzberg
Gigascience 6 (11), gix097, 2017
2052017
The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts
Z Liu, S Liu, J Yao, L Bao, J Zhang, Y Li, C Jiang, L Sun, R Wang, ...
Nature communications 7 (1), 1-13, 2016
2042016
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
S Kovaka, AV Zimin, GM Pertea, R Razaghi, SL Salzberg, M Pertea
Genome biology 20 (1), 1-13, 2019
1992019
Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation
JL Wegrzyn, JD Liechty, KA Stevens, LS Wu, CA Loopstra, ...
Genetics 196 (3), 891-909, 2014
1962014
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