Per Larsson
Per Larsson
Assistant Professor, Uppsala University
Verified email at farmaci.uu.se
Title
Cited by
Cited by
Year
GROMACS 4.5: A high-throughput and highly parallel open source molecular simulation toolkit
S Pronk, S Páll, R Schulz, P Larsson, P Bjelkmar, R Apostolov, MR Shirts, ...
Bioinformatics, 2013
52752013
Implementation of the CHARMM force field in GROMACS: analysis of protein stability effects from correction maps, virtual interaction sites, and water models
P Bjelkmar, P Larsson, MA Cuendet, B Hess, E Lindahl
Journal of chemical theory and computation 6 (2), 459-466, 2010
6442010
the GROMACS development team
MJ Abraham, D Van Der Spoel, E Lindahl, B Hess
GROMACS user manual version 5 (2), 1-298, 2014
362*2014
Thermodynamics of hydrogen bonding in hydrophilic and hydrophobic media
D Van Der Spoel, PJ Van Maaren, P Larsson, N Tîmneanu
The Journal of Physical Chemistry B 110 (9), 4393-4398, 2006
3302006
Using multiple templates to improve quality of homology models in automated homology modeling
P Larsson, B Wallner, E Lindahl, A Elofsson
Protein Science 17 (6), 990-1002, 2008
1532008
Copernicus: A new paradigm for parallel adaptive molecular dynamics
S Pronk, GR Bowman, B Hess, P Larsson, IS Haque, VS Pande, I Pouya, ...
High Performance Computing, Networking, Storage and Analysis (SC), 2011 …, 2011
722011
Pcons. net: protein structure prediction meta server
B Wallner, P Larsson, A Elofsson
Nucleic acids research 35 (suppl_2), W369-W374, 2007
712007
Assessment of global and local model quality in CASP8 using Pcons and ProQ
P Larsson, MJ Skwark, B Wallner, A Elofsson
Proteins: Structure, Function, and Bioinformatics 77 (S9), 167-172, 2009
702009
Lipid Tail Protrusion in Simulations Predicts Fusogenic Activity of Influenza Fusion Peptide Mutants and Conformational Models
P Larsson, PM Kasson
PLOS Computational Biology 9 (3), e1002950, 2013
652013
Computational prediction of drug solubility in water-based systems: Qualitative and quantitative approaches used in the current drug discovery and development setting
CAS Bergström, P Larsson
International journal of pharmaceutics 540 (1-2), 185-193, 2018
572018
Structure of the Neisserial Outer Membrane Protein Opa60: Loop Flexibility Essential to Receptor Recognition and Bacterial Engulfment
DA Fox, P Larsson, RH Lo, BM Kroncke, PM Kasson, L Columbus
Journal of the American Chemical Society 136 (28), 9938-9946, 2014
472014
Mechanism-based selection of stabilization strategy for amorphous formulations: Insights into crystallization pathways
K Edueng, D Mahlin, P Larsson, CAS Bergström
Journal of Controlled Release 256, 193-202, 2017
462017
Ebolavirus entry requires a compact hydrophobic fist at the tip of the fusion loop
SM Gregory, P Larsson, EA Nelson, PM Kasson, JM White, LK Tamm
Journal of virology 88 (12), 6636-6649, 2014
412014
Algorithm improvements for molecular dynamics simulations
P Larsson, B Hess, E Lindahl
Wiley interdisciplinary reviews: computational molecular science 1 (1), 93-108, 2011
402011
Molecular simulation as a computational pharmaceutics tool to predict drug solubility, solubilization processes and partitioning
S Hossain, A Kabedev, A Parrow, CAS Bergström, P Larsson
European Journal of Pharmaceutics and Biopharmaceutics 137, 46-55, 2019
322019
GROMACS user manual version 4.5. 4
E Apol, R Apostolov, HJC Berendsen, A Van Buuren, P Bjelkmar, ...
Royal Institute of Technology and Uppsala University, Stockholm, 2010
272010
A high‐performance parallel‐generalized born implementation enabled by tabulated interaction rescaling
P Larsson, E Lindahl
Journal of Computational Chemistry 31 (14), 2593-2600, 2010
242010
Improved predictions by Pcons. net using multiple templates
P Larsson, MJ Skwark, B Wallner, A Elofsson
Bioinformatics 27 (3), 426-427, 2011
192011
Characterization of solubilizing nanoaggregates present in different versions of simulated intestinal fluid
AJ Clulow, A Parrow, A Hawley, J Khan, AC Pham, P Larsson, ...
The Journal of Physical Chemistry B 121 (48), 10869-10881, 2017
182017
Aggregation behavior of medium chain fatty acids studied by coarse-grained molecular dynamics simulation
MS Hossain, S Berg, CAS Bergström, P Larsson
Aaps Pharmscitech 20 (2), 1-8, 2019
112019
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