Ray Luo
Ray Luo
Molecular Biology and Biochemistry, Biomedical Engineering, and Chemical and Biomolecular
Verified email at uci.edu - Homepage
Title
Cited by
Cited by
Year
The Amber biomolecular simulation programs
DA Case, TE Cheatham III, T Darden, H Gohlke, R Luo, KM Merz Jr, ...
Journal of computational chemistry 26 (16), 1668-1688, 2005
73722005
A point‐charge force field for molecular mechanics simulations of proteins based on condensed‐phase quantum mechanical calculations
Y Duan, C Wu, S Chowdhury, MC Lee, G Xiong, W Zhang, R Yang, ...
Journal of computational chemistry 24 (16), 1999-2012, 2003
43262003
AMBER 9; 2006
DA Case, TA Dardern, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...
University of California, San Francisco, 2006
4244*2006
Amber 14
DA Case, V Babin, J Berryman, RM Betz, Q Cai, DS Cerutti, ...
University of California, San Francisco, 2014
39812014
Amber 10; 2008
DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...
University of California, San Francisco, 2008
3456*2008
AMBER 2015
DA Case, JT Berryman, RM Betz, DS Cerutti, TE Cheatham Iii, TA Darden, ...
University of California, San Francisco, 2015
25002015
Accelerated Poisson–Boltzmann calculations for static and dynamic systems
R Luo, L David, MK Gilson
Journal of computational chemistry 23 (13), 1244-1253, 2002
4582002
AMBER 12
J Wang, RE Duke, R Luo, RC Walker, W Zhang, KM Merz, B Roberts, ...
University of California: San Francisco, 2012
383*2012
AMBER 11, University of California, San Francisco
DA Case, TA Darden, TE Cheatham III, CL Simmerling, J Wang, RE Duke, ...
Google Scholar There is no corresponding record for this reference, 2010
2852010
New-generation amber united-atom force field
L Yang, C Tan, MJ Hsieh, J Wang, Y Duan, P Cieplak, J Caldwell, ...
The journal of physical chemistry B 110 (26), 13166-13176, 2006
2082006
Recent Developments and Applications of the MMPBSA Method
C Wang, DA Greene, L Xiao, R Qi, R Luo
Frontiers in Molecular Biosciences 4, 87, 2018
2052018
Implicit nonpolar solvent models
C Tan, YH Tan, R Luo
The Journal of Physical Chemistry B 111 (42), 12263-12274, 2007
2052007
How well does Poisson− Boltzmann implicit solvent agree with explicit solvent? A quantitative analysis
C Tan, L Yang, R Luo
The Journal of Physical Chemistry B 110 (37), 18680-18687, 2006
1762006
A Poisson–Boltzmann dynamics method with nonperiodic boundary condition
Q Lu, R Luo
The Journal of chemical physics 119 (21), 11035-11047, 2003
1682003
Virtual screening using molecular simulations
T Yang, JC Wu, C Yan, Y Wang, R Luo, MB Gonzales, KN Dalby, P Ren
Proteins: Structure, Function, and Bioinformatics 79 (6), 1940-1951, 2011
1602011
An analysis of the interactions between the Sem− 5 SH3 domain and its ligands using molecular dynamics, free energy calculations, and sequence analysis
W Wang, WA Lim, A Jakalian, J Wang, J Wang, R Luo, CI Bayly, ...
Journal of the American Chemical Society 123 (17), 3986-3994, 2001
1552001
The physical basis of nucleic acid base stacking in water
R Luo, HSR Gilson, MJ Potter, MK Gilson
Biophysical journal 80 (1), 140-148, 2001
1332001
Amber 2020
DA Case, K Belfon, I Ben-Shalom, SR Brozell, D Cerutti, T Cheatham, ...
1312020
AMBER 8. 2004
DA Case, TA Darden, III TE Cheatham, CL Simmerling, J Wang, RE Duke, ...
San Francisco: University of California, 2004
131*2004
Development of polarizable models for molecular mechanical calculations I: parameterization of atomic polarizability
J Wang, P Cieplak, J Li, T Hou, R Luo, Y Duan
The journal of physical chemistry B 115 (12), 3091-3099, 2011
1302011
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Articles 1–20