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John D Blischak
John D Blischak
Freelance Scientific Software Developer
Verified email at uchicago.edu - Homepage
Title
Cited by
Cited by
Year
Batch effects and the effective design of single-cell gene expression studies
PY Tung, JD Blischak, CJ Hsiao, DA Knowles, JE Burnett, JK Pritchard, ...
Scientific reports 7 (1), 39921, 2017
3322017
Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels
NE Banovich, X Lan, G McVicker, B Van de Geijn, JF Degner, JD Blischak, ...
PLoS genetics 10 (9), e1004663, 2014
3012014
A quick introduction to version control with Git and GitHub
JD Blischak, ER Davenport, G Wilson
PLoS computational biology 12 (1), e1004668, 2016
2432016
Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes
DA Knowles, CK Burrows, JD Blischak, KM Patterson, DJ Serie, N Norton, ...
Elife 7, e33480, 2018
1042018
Mycobacterial infection induces a specific human innate immune response
JD Blischak, L Tailleux, A Mitrano, LB Barreiro, Y Gilad
bioRxiv, 2015
692015
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis
CJ Hsiao, PY Tung, JD Blischak, JE Burnett, KA Barr, KK Dey, ...
Genome research 30 (4), 611-621, 2020
662020
Discovery and characterization of variance QTLs in human induced pluripotent stem cells
AK Sarkar, PY Tung, JD Blischak, JE Burnett, YI Li, M Stephens, Y Gilad
PLoS genetics 15 (4), e1008045, 2019
652019
Creating and sharing reproducible research code the workflowr way
JD Blischak, P Carbonetto, M Stephens
F1000Research 8, 2019
522019
A comparative study of endoderm differentiation in humans and chimpanzees
LE Blake, SM Thomas, JD Blischak, CJ Hsiao, C Chavarria, M Myrthil, ...
Genome biology 19, 1-18, 2018
322018
Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells
JD Blischak, L Tailleux, M Myrthil, C Charlois, E Bergot, A Dinh, G Morizot, ...
Scientific Reports 7 (1), 5702, 2017
172017
Patterns of transcriptional response to 1, 25-dihydroxyvitamin D3 and bacterial lipopolysaccharide in primary human monocytes
SN Kariuki, JD Blischak, S Nakagome, DB Witonsky, A Di Rienzo
G3: Genes, Genomes, Genetics 6 (5), 1345-1355, 2016
112016
Mycobacterial infection induces a specific human innate immune response. Sci Rep. 2015; 5: 16882
JD Blischak, L Tailleux, A Mitrano, LB Barreiro, Y Gilad
Epub 2015/11/21. doi: 10.1038/srep16882. PubMed PMID: 26586179, 0
7
Batch effects and the effective design of single-cell gene expression studies. Sci Rep 7: 39921
PY Tung, JD Blischak, CJ Hsiao, DA Knowles, JE Burnett, JK Pritchard, ...
62017
A Methodological Assessment and Characterization of Genetically-Driven Variation in Three Human Phosphoproteomes
BW Engelmann, CJ Hsiao, JD Blischak, Y Fourne, Z Khan, M Ford, ...
Scientific Reports 8 (1), 12106, 2018
32018
The Effects of Growth Hormone and Insulin-Like Growth Factor-1 Treatments on Hepatic Gene Expression in Obese and Diabetic Mice with Nonalcoholic Fatty Liver Disease
JD Blischak
Ohio University, 2010
12010
swcarpentry/shell-novice: Software Carpentry: the UNIX shell, June 2019
G Wilson, G Capes, GA Devenyi, C Koch, R Silva, A Srinath, C Morris, ...
2019
swcarpentry/sql-novice-survey: Software Carpentry: Using SQL and Databases, June 2019
G Wilson, R Silva, A Boughton, SJ McKay, R Rampin, T Guignard, ...
2019
Preliminary list of links and DOI's for teaching materials for 2016 school.
C Gillespie, I Gonzalez, J Blischak, D Haine, C Koch, D Chen, G Devenyi, ...
Zenodo, 2016
2016
Investigating susceptibility to tuberculosis using functional genomics approaches
JD Blischak
The University of Chicago, 2016
2016
Software Carpentry: Programming with MATLAB
A Kotliarskyi, A Boughton, I Kiral-Kornek, J Moore, J Pearson, J Allen, ...
Zenodo, 2015
2015
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