| The Perseus computational platform for comprehensive analysis of (prote) omics data S Tyanova, T Temu, P Sinitcyn, A Carlson, MY Hein, T Geiger, M Mann, ... Nature methods 13 (9), 731-740, 2016 | 6535 | 2016 |
| The MaxQuant computational platform for mass spectrometry-based shotgun proteomics S Tyanova, T Temu, J Cox Nature protocols 11 (12), 2301-2319, 2016 | 3643 | 2016 |
| Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling K Sharma, RCJ D’Souza, S Tyanova, C Schaab, JR Wiśniewski, J Cox, ... Cell reports 8 (5), 1583-1594, 2014 | 979 | 2014 |
| Cell type–and brain region–resolved mouse brain proteome K Sharma, S Schmitt, CG Bergner, S Tyanova, N Kannaiyan, ... Nature neuroscience 18 (12), 1819-1831, 2015 | 725 | 2015 |
| Global, quantitative and dynamic mapping of protein subcellular localization DN Itzhak, S Tyanova, J Cox, GHH Borner elife 5, e16950, 2016 | 531 | 2016 |
| Perseus: a bioinformatics platform for integrative analysis of proteomics data in cancer research S Tyanova, J Cox Cancer systems biology: Methods and protocols, 133-148, 2018 | 465 | 2018 |
| Proteomic maps of breast cancer subtypes S Tyanova, R Albrechtsen, P Kronqvist, J Cox, M Mann, T Geiger Nature communications 7 (1), 10259, 2016 | 314 | 2016 |
| Visualization of LC‐MS/MS proteomics data in MaxQuant S Tyanova, T Temu, A Carlson, P Sinitcyn, M Mann, J Cox Proteomics 15 (8), 1453-1456, 2015 | 259 | 2015 |
| Proteomics reveals the effects of sustained weight loss on the human plasma proteome PE Geyer, NJ Wewer Albrechtsen, S Tyanova, N Grassl, EW Iepsen, ... Molecular systems biology 12 (12), 901, 2016 | 209 | 2016 |
| Integrative proteomic profiling of ovarian cancer cell lines reveals precursor cell associated proteins and functional status F Coscia, KM Watters, M Curtis, MA Eckert, CY Chiang, S Tyanova, ... Nature communications 7 (1), 12645, 2016 | 205 | 2016 |
| The proteome of primary prostate cancer D Iglesias-Gato, P Wikström, S Tyanova, C Lavallee, E Thysell, J Carlsson, ... European urology 69 (5), 942-952, 2016 | 133 | 2016 |
| A mass spectrometry-based approach for mapping protein subcellular localization reveals the spatial proteome of mouse primary neurons DN Itzhak, C Davies, S Tyanova, A Mishra, J Williamson, R Antrobus, ... Cell reports 20 (11), 2706-2718, 2017 | 116 | 2017 |
| Machine learning-based classification of diffuse large B-cell lymphoma patients by their protein expression profiles SJ Deeb, S Tyanova, M Hummel, M Schmidt-Supprian, J Cox, M Mann Molecular & Cellular Proteomics 14 (11), 2947-2960, 2015 | 90 | 2015 |
| MaxQuant for in-depth analysis of large SILAC datasets S Tyanova, M Mann, J Cox Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) Methods and …, 2014 | 84 | 2014 |
| The proteome of prostate cancer bone metastasis reveals heterogeneity with prognostic implications D Iglesias-Gato, E Thysell, S Tyanova, S Crnalic, A Santos, TS Lima, ... Clinical Cancer Research 24 (21), 5433-5444, 2018 | 78 | 2018 |
| Phosphorylation variation during the cell cycle scales with structural propensities of proteins S Tyanova, J Cox, J Olsen, M Mann, D Frishman PLoS computational biology 9 (1), e1002842, 2013 | 63 | 2013 |
| Multiplexed proteome analysis with neutron-encoded stable isotope labeling in cells and mice KA Overmyer, S Tyanova, AS Hebert, MS Westphall, J Cox, JJ Coon Nature protocols 13 (2), 293-306, 2018 | 41 | 2018 |
| SILAC-based quantitative proteomics using mass spectrometry quantifies endoplasmic reticulum stress in whole HeLa cells DN Itzhak, F Sacco, N Nagaraj, S Tyanova, M Mann, M Murgia Disease models & mechanisms 12 (11), dmm040741, 2019 | 15 | 2019 |
| DUSP4 protects BRAF-and NRAS-mutant melanoma from oncogene overdose through modulation of MITF N Gutierrez-Prat, HL Zuberer, L Mangano, Z Karimaddini, L Wolf, ... Life Science Alliance 5 (9), 2022 | 9 | 2022 |
| A cross-species spatiotemporal proteomic analysis identifies UBE3A-dependent signaling pathways and targets NJ Pandya, S Meier, S Tyanova, M Terrigno, C Wang, AM Punt, ... Molecular psychiatry 27 (5), 2590-2601, 2022 | 5 | 2022 |
