Mark P. Simmons
Mark P. Simmons
Professor of Biology, Colorado State University
Verified email at rams.colostate.edu - Homepage
TitleCited byYear
Gaps as characters in sequence-based phylogenetic analyses
MP Simmons, H Ochoterena
Systematic biology 49 (2), 369-381, 2000
23322000
Phylogeny and subfamilial classification of the grasses (Poaceae)
Grass Phylogeny Working Group, NP Barker, LG Clark, JI Davis, ...
Annals of the Missouri Botanical Garden, 373-457, 2001
5992001
Functional trait niches of North American lotic insects: traits-based ecological applications in light of phylogenetic relationships
NLR Poff, JD Olden, NKM Vieira, DS Finn, MP Simmons, BC Kondratieff
Journal of the North American Benthological Society 25 (4), 730-755, 2006
5912006
How meaningful are Bayesian support values?
MP Simmons, KM Pickett, M Miya
Molecular Biology and Evolution 21 (1), 188-199, 2004
3162004
Independence of alignment and tree search
MP Simmons
Molecular Phylogenetics and Evolution 31 (3), 874-879, 2004
2662004
Incorporation, relative homoplasy, and effect of gap characters in sequence-based phylogenetic analyses
MP Simmons, H Ochoterena, TG Carr
Systematic Biology 50 (3), 454, 2001
2282001
A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values
JI Davis, DW Stevenson, G Petersen, O Seberg, LM Campbell, ...
Systematic Botany 29 (3), 467-510, 2004
1922004
Data Decisiveness, Data Quality, and Incongruence in Phylogenetic Analysis: An Example From the Monocotyledons Using Mitochondrial atp A Sequences
JI Davis, MP Simmons, DW Stevenson, JF Wendel
Systematic Biology 47 (2), 282-310, 1998
1621998
Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade
N Baumberger, B Doesseger, R Guyot, A Diet, RL Parsons, MA Clark, ...
Plant physiology 131 (3), 1313-1326, 2003
1242003
Phylogeny of the Cucurbitales based on DNA sequences of nine loci from three genomes: implications for morphological and sexual system evolution
LB Zhang, MP Simmons, A Kocyan, SS Renner
Molecular Phylogenetics and evolution 39 (2), 305-322, 2006
1202006
Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes
DN Richardson, MP Simmons, ASN Reddy
BMC genomics 7 (1), 18, 2006
1082006
The relative performance of indel-coding methods in simulations
MP Simmons, K Müller, AP Norton
Molecular Phylogenetics and Evolution 44 (2), 724-740, 2007
1072007
Phylogeny of the Celastraceae inferred from 26S nuclear ribosomal DNA, phytochrome B, rbcL, atpB, and morphology
MP Simmons, V Savolainen, CC Clevinger, RH Archer, JI Davis
Molecular Phylogenetics and Evolution 19 (3), 353-366, 2001
1032001
Phylogeny of the Celastraceae inferred from phytochrome B gene sequence and morphology
MP Simmons, CC Clevinger, V Savolainen, RH Archer, S Mathews, ...
American journal of botany 88 (2), 313-325, 2001
972001
Phylogeny and delimitation of the Celastrales inferred from nuclear and plastid genes
LB Zhang, MP Simmons
Systematic Botany 31 (1), 122-137, 2006
902006
Misleading results of likelihood‐based phylogenetic analyses in the presence of missing data
MP Simmons
Cladistics 28 (2), 208-222, 2012
832012
A penalty of using anonymous dominant markers (AFLPs, ISSRs, and RAPDs) for phylogenetic inference
MP Simmons, LB Zhang, CT Webb, K Müller
Molecular Phylogenetics and Evolution 42 (2), 528-542, 2007
802007
Celastraceae
MP Simmons
Flowering Plants· Dicotyledons, 29-64, 2004
782004
Relationships and morphological character change among genera of Celastraceae sensu lato (including Hippocrateaceae)
MP Simmons, JP Hedin
Annals of the Missouri Botanical Garden, 723-757, 1999
681999
Spurious 99% bootstrap and jackknife support for unsupported clades
MP Simmons, JV Freudenstein
Molecular Phylogenetics and Evolution 61 (1), 177-191, 2011
662011
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Articles 1–20