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Prof. Dr. Sven Nahnsen
Prof. Dr. Sven Nahnsen
Professor for Biomedical Data Science
Verified email at qbic.uni-tuebingen.de - Homepage
Title
Cited by
Cited by
Year
The nf-core framework for community-curated bioinformatics pipelines
PA Ewels, A Peltzer, S Fillinger, H Patel, J Alneberg, A Wilm, MU Garcia, ...
Nature biotechnology 38 (3), 276-278, 2020
10622020
Sustainable data analysis with Snakemake
F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ...
F1000Research 10, 2021
8222021
OpenMS: a flexible open-source software platform for mass spectrometry data analysis
HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ...
Nature methods 13 (9), 741-748, 2016
6042016
Swarm learning for decentralized and confidential clinical machine learning
S Warnat-Herresthal, H Schultze, KL Shastry, S Manamohan, ...
Nature 594 (7862), 265-270, 2021
5342021
Tools for label-free peptide quantification
S Nahnsen, C Bielow, K Reinert, O Kohlbacher
Molecular & Cellular Proteomics 12 (3), 549-556, 2013
3022013
An automated pipeline for high-throughput label-free quantitative proteomics
H Weisser, S Nahnsen, J Grossmann, L Nilse, A Quandt, H Brauer, ...
Journal of proteome research 12 (4), 1628-1644, 2013
1802013
Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19
B Krämer, R Knoll, L Bonaguro, M ToVinh, J Raabe, ...
Immunity 54 (11), 2650-2669. e14, 2021
1652021
Interpretations of environmental microbial community studies are biased by the selected 16S rRNA (gene) amplicon sequencing pipeline
D Straub, N Blackwell, A Langarica-Fuentes, A Peltzer, S Nahnsen, ...
Frontiers in Microbiology 11, 550420, 2020
1402020
Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma
MW Löffler, C Mohr, L Bichmann, LK Freudenmann, M Walzer, ...
Genome medicine 11, 1-16, 2019
1092019
Suppression of casein kinase 1α in melanoma cells induces a switch in β-catenin signaling to promote metastasis
T Sinnberg, M Menzel, S Kaesler, T Biedermann, B Sauer, S Nahnsen, ...
Cancer research 70 (17), 6999-7009, 2010
1042010
Personalized peptide vaccine-induced immune response associated with long-term survival of a metastatic cholangiocarcinoma patient
MW Löffler, PA Chandran, K Laske, C Schroeder, I Bonzheim, M Walzer, ...
Journal of hepatology 65 (4), 849-855, 2016
852016
Transcriptome profiling identifies TIGIT as a marker of T‐cell exhaustion in liver cancer
D Ostroumov, S Duong, J Wingerath, N Woller, MP Manns, K Timrott, ...
Hepatology 73 (4), 1399-1418, 2021
762021
Downregulation of TGR5 (GPBAR1) in biliary epithelial cells contributes to the pathogenesis of sclerosing cholangitis
M Reich, L Spomer, C Klindt, K Fuchs, J Stindt, K Deutschmann, J Höhne, ...
Journal of hepatology 75 (3), 634-646, 2021
622021
Probabilistic consensus scoring improves tandem mass spectrometry peptide identification
S Nahnsen, A Bertsch, J Rahnenfuhrer, A Nordheim, O Kohlbacher
Journal of proteome research 10 (8), 3332-3343, 2011
602011
ODGI: understanding pangenome graphs
A Guarracino, S Heumos, S Nahnsen, P Prins, E Garrison
Bioinformatics 38 (13), 3319-3326, 2022
562022
qcML: an exchange format for quality control metrics from mass spectrometry experiments
M Walzer, LE Pernas, S Nasso, W Bittremieux, S Nahnsen, ...
Molecular & Cellular Proteomics 13 (8), 1905-1913, 2014
552014
Optimal de novo design of MRM experiments for rapid assay development in targeted proteomics
A Bertsch, S Jung, A Zerck, N Pfeifer, S Nahnsen, C Henneges, ...
Journal of proteome research 9 (5), 2696-2704, 2010
522010
Specific induction of double negative B cells during protective and pathogenic immune responses
C Ruschil, G Gabernet, G Lepennetier, S Heumos, M Kaminski, Z Hracsko, ...
Frontiers in immunology 11, 606338, 2020
512020
Clinical and genetic tumor characteristics of responding and non-responding patients to PD-1 inhibition in hepatocellular carcinoma
S Spahn, D Roessler, R Pompilia, G Gabernet, BP Gladstone, M Horger, ...
Cancers 12 (12), 3830, 2020
492020
Mass spectrometry at the interface of proteomics and genomics
K Krug, S Nahnsen, B Macek
Molecular bioSystems 7 (2), 284-291, 2011
482011
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Articles 1–20