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John Hamilton
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Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Y Kawahara, M de la Bastide, JP Hamilton, H Kanamori, WR McCombie, ...
Rice 6 (1), 4, 2013
14142013
The TIGR rice genome annotation resource: improvements and new features
S Ouyang, W Zhu, J Hamilton, H Lin, M Campbell, K Childs, ...
Nucleic acids research 35 (suppl_1), D883-D887, 2006
11532006
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
CA Lévesque, H Brouwer, L Cano, JP Hamilton, C Holt, E Huitema, ...
Genome biology 11 (7), R73, 2010
3962010
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
MA Campbell, BJ Haas, JP Hamilton, SM Mount, CR Buell
BMC genomics 7 (1), 327, 2006
3612006
Development of a large SNP genotyping array and generation of high-density genetic maps in tomato
SC Sim, G Durstewitz, J Plieske, R Wieseke, MW Ganal, A Van Deynze, ...
PLoS One 7 (7), e40563, 2012
2982012
Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato
MA Hardigan, FPE Laimbeer, L Newton, E Crisovan, JP Hamilton, ...
Proceedings of the National Academy of Sciences 114 (46), E9999-E10008, 2017
2312017
Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps
SK Sharma, D Bolser, J de Boer, M Sønderkær, W Amoros, MF Carboni, ...
G3: Genes, Genomes, Genetics 3 (11), 2031-2047, 2013
2282013
Single nucleotide polymorphism discovery in elite North American potato germplasm
JP Hamilton, CN Hansey, BR Whitty, K Stoffel, AN Massa, A Van Deynze, ...
BMC genomics 12 (1), 302, 2011
2262011
The institute for genomic research Osa1 rice genome annotation database
Q Yuan, S Ouyang, A Wang, W Zhu, R Maiti, H Lin, J Hamilton, B Haas, ...
Plant physiology 138 (1), 18-26, 2005
2232005
The TIGR plant transcript assemblies database
KL Childs, JP Hamilton, W Zhu, E Ly, F Cheung, H Wu, PD Rabinowicz, ...
Nucleic Acids Research 35 (suppl_1), D846-D851, 2006
2122006
Advances in plant genome sequencing
JP Hamilton, C Robin Buell
The Plant Journal 70 (1), 177-190, 2012
2112012
Integration of two diploid potato linkage maps with the potato genome sequence
KJ Felcher, JJ Coombs, AN Massa, CN Hansey, JP Hamilton, RE Veilleux, ...
PLoS One 7 (4), e36347, 2012
2022012
Genome‐guided investigation of plant natural product biosynthesis
F Kellner, J Kim, BJ Clavijo, JP Hamilton, KL Childs, B Vaillancourt, ...
The Plant Journal 82 (4), 680-692, 2015
1742015
Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species
E Góngora-Castillo, KL Childs, G Fedewa, JP Hamilton, DK Liscombe, ...
PloS one 7 (12), e52506, 2012
1632012
The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications
N Choisne, N Demange, G Orjeda, S Samain, A D'Hont, L Cattolico, ...
BMC biology 3, 2005
1522005
Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes
BN Adhikari, JP Hamilton, MM Zerillo, N Tisserat, CA Lévesque, CR Buell
PLoS One 8 (10), e75072, 2013
1502013
Genome reduction uncovers a large dispensable genome and adaptive role for copy number variation in asexually propagated Solanum tuberosum
MA Hardigan, E Crisovan, JP Hamilton, J Kim, P Laimbeer, CP Leisner, ...
The Plant Cell 28 (2), 388-405, 2016
1442016
Gene amplification of 5-enol-pyruvylshikimate-3-phosphate synthase in glyphosate-resistant Kochia scoparia
AT Wiersma, TA Gaines, C Preston, JP Hamilton, D Giacomini, CR Buell, ...
Planta 241 (2), 463-474, 2015
1302015
A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus
LA Giddings, DK Liscombe, JP Hamilton, KL Childs, D DellaPenna, ...
Journal of Biological Chemistry 286 (19), 16751-16757, 2011
1192011
Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement
S Wu, KH Lau, Q Cao, JP Hamilton, H Sun, C Zhou, L Eserman, ...
Nature Communications 9 (1), 4580, 2018
1182018
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Articles 1–20