| Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies M Tramontano, S Andrejev, M Pruteanu, M Klünemann, M Kuhn, ... Nature microbiology 3 (4), 514-522, 2018 | 223 | 2018 |
| A multi-level study of recombinant Pichia pastoris in different oxygen conditions K Baumann, M Carnicer, M Dragosits, AB Graf, J Stadlmann, P Jouhten, ... BMC systems biology 4, 1-22, 2010 | 180 | 2010 |
| Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A P Jouhten, E Rintala, A Huuskonen, A Tamminen, M Toivari, M Wiebe, ... BMC systems biology 2, 1-19, 2008 | 142 | 2008 |
| Metabolic flux profiling of recombinant protein secreting Pichia pastoris growing on glucose:methanol mixtures J Jordà, P Jouhten, E Cámara, H Maaheimo, J Albiol, P Ferrer Microbial cell factories 11, 1-14, 2012 | 134 | 2012 |
| Metabolic flux profiling of Pichia pastoris grown on glycerol/methanol mixtures in chemostat cultures at low and high dilution rates A Sola, P Jouhten, H Maaheimo, F Sanchez-Ferrando, T Szyperski, ... Microbiology 153 (1), 281-290, 2007 | 128 | 2007 |
| Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species E Pitkänen, P Jouhten, J Hou, MF Syed, P Blomberg, J Kludas, M Oja, ... PLoS computational biology 10 (2), e1003465, 2014 | 106 | 2014 |
| Inferring branching pathways in genome-scale metabolic networks E Pitkänen, P Jouhten, J Rousu BMC systems biology 3, 1-22, 2009 | 90 | 2009 |
| Central carbon metabolism of Saccharomyces cerevisiae in anaerobic, oxygen-limited and fully aerobic steady-state conditions and following a shift to anaerobic … MG Wiebe, E Rintala, A Tamminen, H Simolin, L Salusjärvi, M Toivari, ... FEMS Yeast research 8 (1), 140-154, 2008 | 90 | 2008 |
| Correlation of gene expression and protein production rate-a system wide study M Arvas, T Pakula, B Smit, J Rautio, H Koivistoinen, P Jouhten, E Lindfors, ... BMC genomics 12, 1-25, 2011 | 74 | 2011 |
| Saccharomyces cerevisiae metabolism in ecological context P Jouhten, O Ponomarova, R Gonzalez, KR Patil FEMS yeast research 16 (7), fow080, 2016 | 66 | 2016 |
| Laboratory evolution reveals regulatory and metabolic trade-offs of glycerol utilization in Saccharomyces cerevisiae T Strucko, K Zirngibl, F Pereira, E Kafkia, ET Mohamed, M Rettel, F Stein, ... Metabolic engineering 47, 73-82, 2018 | 59 | 2018 |
| An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments A Rantanen, J Rousu, P Jouhten, N Zamboni, H Maaheimo, E Ukkonen BMC bioinformatics 9, 1-19, 2008 | 56 | 2008 |
| Hypoxia and GABA shunt activation in the pathogenesis of Alzheimer's disease A Salminen, P Jouhten, T Sarajärvi, A Haapasalo, M Hiltunen Neurochemistry international 92, 13-24, 2016 | 55 | 2016 |
| l‐galactonate dehydratase is part of the fungal path for d‐galacturonic acid catabolism S Kuorelahti, P Jouhten, H Maaheimo, M Penttilä, P Richard Molecular microbiology 61 (4), 1060-1068, 2006 | 53 | 2006 |
| Adaptive laboratory evolution of ale and lager yeasts for improved brewing efficiency and beer quality B Gibson, M Dahabieh, K Krogerus, P Jouhten, F Magalhães, R Pereira, ... Annual review of food science and technology 11, 23-44, 2020 | 49 | 2020 |
| Yeast metabolic chassis designs for diverse biotechnological products P Jouhten, T Boruta, S Andrejev, F Pereira, I Rocha, KR Patil Scientific reports 6 (1), 29694, 2016 | 44 | 2016 |
| 13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon … P Jouhten, E Pitkänen, T Pakula, M Saloheimo, M Penttilä, H Maaheimo BMC systems biology 3, 1-16, 2009 | 34 | 2009 |
| Dynamic flux balance analysis of the metabolism of Saccharomyces cerevisiae during the shift from fully respirative or respirofermentative metabolic states to … P Jouhten, M Wiebe, M Penttilä The FEBS journal 279 (18), 3338-3354, 2012 | 33 | 2012 |
| Transcriptional Responses of Saccharomyces cerevisiae to Shift from Respiratory and Respirofermentative to Fully Fermentative Metabolism E Rintala, P Jouhten, M Toivari, MG Wiebe, H Maaheimo, M Penttilä, ... Omics: a journal of integrative biology 15 (7-8), 461-476, 2011 | 33 | 2011 |
| ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis E Pitkänen, A Åkerlund, A Rantanen, P Jouhten, E Ukkonen Journal of integrative bioinformatics 5 (2), 188-200, 2008 | 32 | 2008 |
