| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1666* | 2020 |
| Somatic mutations and cell identity linked by Genotyping of Transcriptomes AS Nam, KT Kim, R Chaligne, F Izzo, C Ang, J Taylor, RM Myers, ... Nature 571 (7765), 355-360, 2019 | 231 | 2019 |
| Paternally inherited cis-regulatory structural variants are associated with autism WM Brandler, D Antaki, M Gujral, ML Kleiber, J Whitney, MS Maile, ... Science 360 (6386), 327-331, 2018 | 201 | 2018 |
| Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB) SJ Pamp, ED Harrington, SR Quake, DA Relman, PC Blainey Genome research 22 (6), 1107-1119, 2012 | 147 | 2012 |
| Estimating rates of alternative splicing in mammals and invertebrates ED Harrington, S Boue, J Valcarcel, JG Reich, P Bork Nature genetics 36 (9), 916-917, 2004 | 140 | 2004 |
| Transcriptome variation in human tissues revealed by long-read sequencing DA Glinos, G Garborcauskas, P Hoffman, N Ehsan, L Jiang, A Gokden, ... Nature 608 (7922), 353-359, 2022 | 130 | 2022 |
| SmashCommunity: a metagenomic annotation and analysis tool M Arumugam, ED Harrington, KU Foerstner, J Raes, P Bork Bioinformatics 26 (23), 2977-2978, 2010 | 129 | 2010 |
| ASTD: the alternative splicing and transcript diversity database G Koscielny, V Le Texier, C Gopalakrishnan, V Kumanduri, JJ Riethoven, ... Genomics 93 (3), 213-220, 2009 | 129 | 2009 |
| Complex genomic rearrangements lead to novel primate gene function FD Ciccarelli, C von Mering, M Suyama, ED Harrington, E Izaurralde, ... Genome research 15 (3), 343-351, 2005 | 129 | 2005 |
| Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities J Beaulaurier, E Luo, JM Eppley, P Den Uyl, X Dai, A Burger, DJ Turner, ... Genome Research 30 (3), 437-446, 2020 | 89 | 2020 |
| Quantitative assessment of protein function prediction from metagenomics shotgun sequences ED Harrington, AH Singh, T Doerks, I Letunic, C Von Mering, LJ Jensen, ... Proceedings of the National Academy of Sciences 104 (35), 13913-13918, 2007 | 89 | 2007 |
| Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice JY Choi, ZN Lye, SC Groen, X Dai, P Rughani, S Zaaijer, ED Harrington, ... Genome biology 21, 1-27, 2020 | 87 | 2020 |
| Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions? A Pallejà, ED Harrington, P Bork BMC genomics 9, 1-10, 2008 | 79 | 2008 |
| Protein coding potential of retroviruses and other transposable elements in vertebrate genomes EM Zdobnov, M Campillos, ED Harrington, D Torrents, P Bork Nucleic acids research 33 (3), 946-954, 2005 | 73 | 2005 |
| Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing AS Deshpande, N Ulahannan, M Pendleton, X Dai, L Ly, JM Behr, ... Nature Biotechnology 40 (10), 1488-1499, 2022 | 58 | 2022 |
| Predicting biological networks from genomic data ED Harrington, LJ Jensen, P Bork FEBS letters 582 (8), 1251-1258, 2008 | 55 | 2008 |
| Off earth identification of bacterial populations using 16S rDNA nanopore sequencing AS Burton, SE Stahl, KK John, M Jain, S Juul, DJ Turner, ED Harrington, ... Genes 11 (1), 76, 2020 | 51 | 2020 |
| LamPORE: rapid, accurate and highly scalable molecular screening for SARS-CoV-2 infection, based on nanopore sequencing P James, D Stoddart, ED Harrington, J Beaulaurier, L Ly, SW Reid, ... MedRxiv, 2020.08. 07.20161737, 2020 | 50 | 2020 |
| Protein function space: viewing the limits or limited by our view? J Raes, ED Harrington, AH Singh, P Bork Current opinion in structural biology 17 (3), 362-369, 2007 | 50 | 2007 |
| Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure N Ulahannan, M Pendleton, A Deshpande, S Schwenk, JM Behr, X Dai, ... BioRxiv, 833590, 2019 | 39 | 2019 |
