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Hadrien Gourlé
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Year
Simulating Illumina Metagenomic Data with InSilicoSeq
H Gourlé, O Karlsson-Lindsjö, J Hayer, E Bongcam-Rudloff
Bioinformatics, 2018
1492018
Ten-week follow-up of monkeypox case-patient, Sweden, 2022
A Pettke, F Filén, K Widgren, A Jacks, H Glans, S Andreasson, ...
Emerging Infectious Diseases 28 (10), 2074, 2022
262022
High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237
A Fischer, I Santana-Cruz, J Hegerman, H Gourlé, E Schieck, M Lambert, ...
Standards in genomic sciences 10, 1-11, 2015
252015
A year in the life of a thrombolite: comparative metatranscriptomics reveals dynamic metabolic changes over diel and seasonal cycles
AS Louyakis, H Gourlé, G Casaburi, RME Bonjawo, AA Duscher, ...
Environmental microbiology 20 (2), 842-861, 2018
242018
nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning
S Krakau, D Straub, H Gourlé, G Gabernet, S Nahnsen
NAR genomics and bioinformatics 4 (1), lqac007, 2022
222022
MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies
M Norling, OE Karlsson-Lindsjö, H Gourlé, E Bongcam-Rudloff, J Hayer
PLoS One 11 (8), e0160334, 2016
172016
The eBioKit, a stand-alone educational platform for bioinformatics
R Hernández-de-Diego, EP de Villiers, T Klingström, H Gourlé, A Conesa, ...
PLoS computational biology 13 (9), e1005616, 2017
162017
Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel
S Zubair, A Fischer, A Liljander, J Meens, J Hegerman, H Gourlé, ...
Standards in Genomic Sciences 10, 1-12, 2015
142015
Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability
M Kierczak, N Rafati, J Höglund, H Gourlé, V Lo Faro, D Schmitz, WE Ek, ...
Nature Communications 13 (1), 2532, 2022
132022
Cross-sectional variations in structure and function of coral reef microbiome with local anthropogenic impacts on the Kenyan coast of the Indian Ocean
S Wambua, H Gourlé, EP de Villiers, O Karlsson-Lindsjö, N Wambiji, ...
Frontiers in Microbiology 12, 673128, 2021
82021
A peek into Western Indian Ocean microbial richness: a pilot for a coral microbiome study
S Wambua, H Gourlé, EP de Villiers, J Ngoi, A Macdonald, ...
bioRxiv, 829564, 2019
22019
Molecular Ecology of Coral Reef Microorganisms in the Western Indian Ocean coast of Kenya
S Wambua, H Gourlé, E de Villiers, O Karlsson, N Wambiji, A Macdonald, ...
bioRxiv, 2020.03. 04.976431, 2020
12020
InSilicoSeq 2.0: Simulating realistic amplicon-based sequence reads
SH Lelieveld, T Maas, TCX Duk, H Gourle, HJ van den Ham
bioRxiv, 2024.02. 16.580469, 2024
2024
A community-curated, global atlas of Bacillus cereus sensu lato genomes for epidemiological surveillance
V Ramnath, M Larralde, P Menchik, AJ Buehler, AS Harrand, T Chung, ...
bioRxiv, 2023.12. 20.572685, 2023
2023
A dive into the coral microbiome
H Gourlé
Acta Universitatis Agriculturae Sueciae, 2020
2020
Comparative analysis of the" Mycoplasma mycoides cluster"
H Gourlé
SLU, Dept. of Animal Breeding and Genetics, 2015
2015
MetLab: a bioinformatics platform for viral metagenomics experiments.
M Norling, O Karlsson, H Gourlé, E Bongcam-Rudloff, J Hayer
2015
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Articles 1–17