Brian Drawert
Brian Drawert
Verified email at unca.edu
TitleCited byYear
URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries
B Drawert, S Engblom, A Hellander
BMC systems biology 6 (1), 76, 2012
1232012
The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation
B Drawert, MJ Lawson, L Petzold, M Khammash
The Journal of chemical physics 132 (7), 074101, 2010
852010
Spatial stochastic dynamics enable robust cell polarization
MJ Lawson, B Drawert, M Khammash, L Petzold, TM Yi
PLoS computational biology 9 (7), e1003139, 2013
512013
Mapscale: a cloud environment for scientific computing
C Bunch, B Drawert, M Norman
University of California, Computer Science Department, Tech. Rep, 2009
292009
Stochastic simulation service: bridging the gap between the computational expert and the biologist
B Drawert, A Hellander, B Bales, D Banerjee, G Bellesia, BJ Daigle Jr, ...
PLoS computational biology 12 (12), e1005220, 2016
282016
Molns: A cloud platform for interactive, reproducible, and scalable spatial stochastic computational experiments in systems biology using pyurdme
B Drawert, M Trogdon, S Toor, L Petzold, A Hellander
SIAM Journal on Scientific Computing 38 (3), C179-C202, 2016
202016
Local error estimates for adaptive simulation of the reaction–diffusion master equation via operator splitting
A Hellander, MJ Lawson, B Drawert, L Petzold
Journal of computational physics 266, 89-100, 2014
182014
Language and runtime support for automatic configuration and deployment of scientific computing software over cloud fabrics
C Bunch, B Drawert, N Chohan, C Krintz, L Petzold, K Shams
Journal of Grid Computing 10 (1), 23-46, 2012
172012
GillesPy: a Python package for stochastic model building and simulation
JH Abel, B Drawert, A Hellander, LR Petzold
IEEE life sciences letters 2 (3), 35-38, 2016
162016
Macromolecular crowding regulates the gene expression profile by limiting diffusion
M Golkaram, S Hellander, B Drawert, LR Petzold
PLoS computational biology 12 (11), e1005122, 2016
132016
Reducing complexity in management of escience computations
PO Östberg, A Hellander, B Drawert, E Elmroth, S Holmgren, L Petzold
Proceedings of the 2012 12th IEEE/ACM International Symposium on Cluster …, 2012
122012
Using stochastic epidemiological models to evaluate conservation strategies for endangered amphibians
B Drawert, M Griesemer, LR Petzold, CJ Briggs
Journal of the Royal Society Interface 14 (133), 20170480, 2017
102017
URDME 1.1: User’s manual
B Drawert, S Engblom, A Hellander
ArXiv e-prints, 2011
102011
A framework for discrete stochastic simulation on 3D moving boundary domains
B Drawert, S Hellander, M Trogdon, TM Yi, L Petzold
The Journal of chemical physics 145 (18), 184113, 2016
82016
Cloudtracker: Using execution provenance to optimize the cost of cloud use
G Douglas, B Drawert, C Krintz, R Wolski
International Conference on Grid Economics and Business Models, 99-113, 2014
72014
Automatic and portable cloud deployment for scientific simulations
CB Horuk, G Douglas, A Gupta, C Krintz, B ABales, G Bellesia, B Drawert, ...
2014 International Conference on High Performance Computing & Simulation …, 2014
62014
A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection–diffusion–reaction problems
B Drawert, B Jacob, Z Li, TM Yi, L Petzold
Journal of computational physics 378, 1-17, 2019
52019
Abstractions for scaling eScience applications to distributed computing environments
PO Ostberg, A Hellander, B Drawert, E Elmroth, S Holmgren, L Petzold
Proceedings of BIOINFORMATICS 2012, International Conference on …, 2012
42012
Quantitative Biology: Theory, Computational Methods, and Models
B Munsky, KT Tuzman, D Fey, M Dobrzynski, BN Kholodenko, S Olson, ...
The MIT Press, 2018
32018
The effect of cell geometry on polarization in budding yeast
M Trogdon, B Drawert, C Gomez, SP Banavar, TM Yi, O Campàs, ...
PLoS computational biology 14 (6), e1006241, 2018
22018
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Articles 1–20