Michael J Trnka
Michael J Trnka
Verified email at cgl.ucsf.edu
Title
Cited by
Cited by
Year
Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
AG Larson, D Elnatan, MM Keenen, MJ Trnka, JB Johnston, ...
Nature 547 (7662), 236-240, 2017
6612017
Structure of a complete mediator-RNA polymerase II pre-initiation complex
PJ Robinson, MJ Trnka, DA Bushnell, RE Davis, PJ Mattei, AL Burlingame, ...
Cell 166 (6), 1411-1422. e16, 2016
1572016
Matching cross-linked peptide spectra: only as good as the worse identification
MJ Trnka, PR Baker, PJJ Robinson, AL Burlingame, RJ Chalkley
Molecular & Cellular Proteomics 13 (2), 420-434, 2014
1322014
Molecular architecture of the yeast Mediator complex
PJ Robinson, MJ Trnka, R Pellarin, CH Greenberg, DA Bushnell, R Davis, ...
elife 4, e08719, 2015
1162015
Structure of the mediator head module bound to the carboxy-terminal domain of RNA polymerase II
PJJ Robinson, DA Bushnell, MJ Trnka, AL Burlingame, RD Kornberg
Proceedings of the National Academy of Sciences 109 (44), 17931-17935, 2012
982012
HP1 reshapes nucleosome core to promote phase separation of heterochromatin
S Sanulli, MJ Trnka, V Dharmarajan, RW Tibble, BD Pascal, ...
Nature 575 (7782), 390-394, 2019
922019
Topographic studies of the GroEL-GroES chaperonin complex by chemical cross-linking using diformyl ethynylbenzene: the power of high resolution electron transfer dissociation …
MJ Trnka, AL Burlingame
Molecular & Cellular Proteomics 9 (10), 2306-2317, 2010
532010
The role of conformational flexibility on protein supercharging in native electrospray ionization
HJ Sterling, CA Cassou, MJ Trnka, AL Burlingame, BA Krantz, ...
Physical Chemistry Chemical Physics 13 (41), 18288-18296, 2011
482011
Improved peak detection and deconvolution of native electrospray mass spectra from large protein complexes
J Lu, MJ Trnka, SH Roh, PJJ Robinson, C Shiau, DG Fujimori, W Chiu, ...
Journal of the American Society for Mass Spectrometry 26 (12), 2141-2151, 2015
422015
Regulation of Rvb1/Rvb2 by a domain within the INO80 chromatin remodeling complex implicates the yeast Rvbs as protein assembly chaperones
CY Zhou, CI Stoddard, JB Johnston, MJ Trnka, I Echeverria, E Palovcak, ...
Cell reports 19 (10), 2033-2044, 2017
362017
Ligand-induced conformational heterogeneity of cytochrome P450 CYP119 identified by 2D NMR spectroscopy with the unnatural amino acid 13C-p-methoxyphenylalanine
JN Lampe, SN Floor, JD Gross, CR Nishida, Y Jiang, MJ Trnka, ...
Journal of the American Chemical Society 130 (48), 16168-16169, 2008
322008
First community-wide, comparative cross-linking mass spectrometry study
C Iacobucci, C Piotrowski, R Aebersold, BC Amaral, P Andrews, K Bernfur, ...
Analytical chemistry 91 (11), 6953-6961, 2019
312019
Reconstitution of nucleosome demethylation and catalytic properties of a Jumonji histone demethylase
C Shiau, MJ Trnka, A Bozicevic, IO Torres, B Al-Sady, AL Burlingame, ...
Chemistry & biology 20 (4), 494-499, 2013
252013
The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h
N Gamarra, SL Johnson, MJ Trnka, AL Burlingame, GJ Narlikar
Elife 7, e35322, 2018
222018
A viral protein restricts Drosophila RNAi immunity by regulating Argonaute activity and stability
A Nayak, DY Kim, MJ Trnka, CH Kerr, PV Lidsky, DJ Stanley, BM Rivera, ...
Cell host & microbe 24 (4), 542-557. e9, 2018
192018
Human Liver Cytochrome P450 3A4 Ubiquitination MOLECULAR RECOGNITION BY UBC7-gp78 AUTOCRINE MOTILITY FACTOR RECEPTOR AND UbcH5a-CHIP-Hsc70-Hsp40 E2-E3 UBIQUITIN LIGASE COMPLEXES
YQ Wang, SM Kim, MJ Trnka, Y Liu, AL Burlingame, MA Correia
Journal of Biological Chemistry 290 (6), 3308-3332, 2015
192015
LEM2 phase separation promotes ESCRT-mediated nuclear envelope reformation
A von Appen, D LaJoie, IE Johnson, MJ Trnka, SM Pick, AL Burlingame, ...
Nature, 1-4, 2020
172020
Histone H3 binding to the PHD1 domain of histone demethylase KDM5A enables active site remodeling
JE Longbotham, CM Chio, V Dharmarajan, MJ Trnka, IO Torres, ...
Nature communications 10 (1), 1-12, 2019
162019
Chaperonin TRiC/CCT modulates the folding and activity of leukemogenic fusion oncoprotein AML1-ETO
SH Roh, M Kasembeli, JG Galaz-Montoya, M Trnka, WCY Lau, ...
Journal of Biological Chemistry 291 (9), 4732-4741, 2016
162016
Deconvolution method for specific and nonspecific binding of ligand to multiprotein complex by native mass spectrometry
S Guan, MJ Trnka, DA Bushnell, PJJ Robinson, JE Gestwicki, ...
Analytical chemistry 87 (16), 8541-8546, 2015
152015
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Articles 1–20