| Acidity promotes tumour progression by altering macrophage phenotype in prostate cancer A El-Kenawi, C Gatenbee, M Robertson-Tessi, R Bravo, J Dhillon, ... British journal of cancer 121 (7), 556-566, 2019 | 117 | 2019 |
| IgA transcytosis and antigen recognition govern ovarian cancer immunity S Biswas, G Mandal, KK Payne, CM Anadon, CD Gatenbee, RA Chaurio, ... Nature 591 (7850), 464-470, 2021 | 115 | 2021 |
| The evolutionary landscape of colorectal tumorigenesis W Cross, M Kovac, V Mustonen, D Temko, H Davis, AM Baker, S Biswas, ... Nature ecology & evolution 2 (10), 1661-1672, 2018 | 114 | 2018 |
| NeoPredPipe: high-throughput neoantigen prediction and recognition potential pipeline RO Schenck, E Lakatos, C Gatenbee, TA Graham, ARA Anderson BMC bioinformatics 20, 1-6, 2019 | 94 | 2019 |
| Evolutionary dynamics of neoantigens in growing tumors E Lakatos, MJ Williams, RO Schenck, WCH Cross, J Househam, L Zapata, ... Nature genetics 52 (10), 1057-1066, 2020 | 87 | 2020 |
| Cytokine expression and microglial activation in progressive supranuclear palsy R Fernández-Botrán, Z Ahmed, FA Crespo, C Gatenbee, J Gonzalez, ... Parkinsonism & related disorders 17 (9), 683-688, 2011 | 77 | 2011 |
| Crohn’s disease and genetic hitchhiking at IBD5 CD Huff, DJ Witherspoon, Y Zhang, C Gatenbee, LA Denson, ... Molecular biology and evolution 29 (1), 101-111, 2012 | 70 | 2012 |
| Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization RR Bravo, E Baratchart, J West, RO Schenck, AK Miller, J Gallaher, ... PLoS computational biology 16 (3), e1007635, 2020 | 69 | 2020 |
| Ovarian cancer immunogenicity is governed by a narrow subset of progenitor tissue-resident memory T cells CM Anadon, X Yu, K Hänggi, S Biswas, RA Chaurio, A Martin, KK Payne, ... Cancer Cell 40 (5), 545-557. e13, 2022 | 66 | 2022 |
| Normal tissue architecture determines the evolutionary course of cancer J West, RO Schenck, C Gatenbee, M Robertson-Tessi, ARA Anderson Nature communications 12 (1), 2060, 2021 | 63 | 2021 |
| Group differences in proneness to inflammation R Pennington, C Gatenbee, B Kennedy, H Harpending, G Cochran Infection, Genetics and Evolution 9 (6), 1371-1380, 2009 | 37 | 2009 |
| IgA-dominated humoral immune responses govern patients' outcome in endometrial cancer G Mandal, S Biswas, CM Anadon, X Yu, CD Gatenbee, S Prabhakaran, ... Cancer research 82 (5), 859-871, 2022 | 29 | 2022 |
| Immunosuppressive niche engineering at the onset of human colorectal cancer CD Gatenbee, AM Baker, RO Schenck, M Strobl, J West, MP Neves, ... Nature Communications 13 (1), 1798, 2022 | 24 | 2022 |
| EvoFreq: visualization of the Evolutionary Frequencies of sequence and model data CD Gatenbee, RO Schenck, RR Bravo, ARA Anderson BMC bioinformatics 20, 1-4, 2019 | 20 | 2019 |
| Histoecology: Applying ecological principles and approaches to describe and predict tumor ecosystem dynamics across space and time CD Gatenbee, ES Minor, RJC Slebos, CH Chung, ARA Anderson Cancer Control 27 (3), 1073274820946804, 2020 | 14 | 2020 |
| Virtual alignment of pathology image series for multi-gigapixel whole slide images CD Gatenbee, AM Baker, S Prabhakaran, O Swinyard, RJC Slebos, ... Nature communications 14 (1), 4502, 2023 | 9 | 2023 |
| Integrated virtual patient framework ARA Anderson, M Robertson-Tessi, K McCash, CD Gatenbee US Patent App. 15/032,969, 2016 | 8 | 2016 |
| The ACROBAT 2022 challenge: automatic registration of breast cancer tissue P Weitz, M Valkonen, L Solorzano, C Carr, K Kartasalo, C Boissin, ... arXiv preprint arXiv:2305.18033, 2023 | 7 | 2023 |
| Macrophage-mediated immunoediting drives ductal carcinoma evolution: space is the game changer C Gatenbee, J West, AM Baker, N Guljar, L Jones, TA Graham, ... bioRxiv, 594598, 2019 | 7 | 2019 |
| Hybrid Automata Library: A modular platform for efficient hybrid modeling with real-time visualization R Bravo, E Baratchart, J West, RO Schenck, AK Miller, J Gallaher, ... Biorxiv, 411538, 2018 | 7 | 2018 |
