Anders Nielsen
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glmmTMB balances speed and flexibility among packages for zero-inflated generalized linear mixed modeling
ME Brooks, K Kristensen, KJ Van Benthem, A Magnusson, CW Berg, ...
The R journal 9 (2), 378-400, 2017
AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models
DA Fournier, HJ Skaug, J Ancheta, J Ianelli, A Magnusson, MN Maunder, ...
Optimization Methods and Software 27 (2), 233-249, 2012
Generalized linear mixed models using AD model builder
H Skaug, D Fournier, B Bolker, A Magnusson, A Nielsen
R package version 0.7 7, 2013
TMB: Automatic differentiation and laplace approximation
K Kristensen, A Nielsen, CW Berg, HJ Skaug, B Bell
Journal of Statistical Software 70 (5), 1-21, 2016
Improving light‐based geolocation by including sea surface temperature
A Nielsen, KA Bigelow, MK Musyl, JR Sibert
Fisheries Oceanography 15 (4), 314-325, 2006
Getting started with the glmmADMB package
B Bolker, H Skaug, A Magnusson, A Nielsen
Postrelease survival, vertical and horizontal movements, and thermal habitats of five species of pelagic sharks in the central Pacific Ocean
MK Musyl, RW Brill, DS Curran, NM Fragoso, LM McNaughton, A Nielsen, ...
Fishery Bulletin 109 (4), 341-368, 2011
Estimation of time-varying selectivity in stock assessments using state-space models
A Nielsen, CW Berg
Fisheries Research 158, 96-101, 2014
glmmTMB: generalized linear mixed models using template model builder
A Magnusson, H Skaug, A Nielsen, C Berg, K Kristensen, M Maechler, ...
R package version 0.1 3, 2017
Improving light and temperature based geolocation by unscented Kalman filtering
CH Lam, A Nielsen, JR Sibert
Fisheries Research 91 (1), 15-25, 2008
Modeling zero-inflated count data with glmmTMB
ME Brooks, K Kristensen, KJ van Benthem, A Magnusson, CW Berg, ...
BioRxiv, 132753, 2017
Preventing the collapse of the Baltic cod stock through an ecosystem-based management approach
M Lindegren, C Möllmann, A Nielsen, NC Stenseth
Proceedings of the National Academy of Sciences 106 (34), 14722-14727, 2009
State–space model for light-based tracking of marine animals
A Nielsen, JR Sibert
Canadian Journal of Fisheries and Aquatic Sciences 64 (8), 1055-1068, 2007
Strategies for fitting nonlinear ecological models in R, AD M odel B uilder, and BUGS
BM Bolker, B Gardner, M Maunder, CW Berg, M Brooks, L Comita, ...
Methods in Ecology and Evolution 4 (6), 501-512, 2013
Ecological forecasting under climate change: the case of Baltic cod
M Lindegren, C Möllmann, A Nielsen, K Brander, BR MacKenzie, ...
Proceedings of the Royal Society B: Biological Sciences 277 (1691), 2121-2130, 2010
Simulation testing the robustness of stock assessment models to error: some results from the ICES strategic initiative on stock assessment methods
JJ Deroba, DS Butterworth, RD Methot Jr, JAA De Oliveira, C Fernandez, ...
ICES Journal of Marine Science 72 (1), 19-30, 2015
Interannual variation in large-scale movement of Atlantic bluefin tuna (Thunnus thynnus) determined from pop-up satellite archival tags
JR Sibert, ME Lutcavage, A Nielsen, RW Brill, SG Wilson
Canadian Journal of Fisheries and Aquatic Sciences 63 (10), 2154-2166, 2006
Incorporating sea-surface temperature to the light-based geolocation model TrackIt
CH Lam, A Nielsen, JR Sibert
Marine Ecology Progress Series 419, 71-84, 2010
Reconstructing migrations of individual cod (Gadus morhua L.) in the Baltic Sea by using electronic data storage tags
S Neuenfeldt, HH HINRICHSEN, A Nielsen, KH Andersen
Fisheries Oceanography 16 (6), 526-535, 2007
Estimation methods for nonlinear state-space models in ecology
MW Pedersen, CW Berg, UH Thygesen, A Nielsen, H Madsen
Ecological Modelling 222 (8), 1394-1400, 2011
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