Xiang-Jun Lu
Title
Cited by
Cited by
Year
3DNA: a software package for the analysis, rebuilding and visualization of three‐dimensional nucleic acid structures
XJ Lu, WK Olson
Nucleic acids research 31 (17), 5108-5121, 2003
16282003
DNA sequence-dependent deformability deduced from protein–DNA crystal complexes
WK Olson, AA Gorin, XJ Lu, LM Hock, VB Zhurkin
Proceedings of the National Academy of Sciences 95 (19), 11163-11168, 1998
10911998
A standard reference frame for the description of nucleic acid base-pair geometry
WK Olson, M Bansal, SK Burley, RE Dickerson, M Gerstein, SC Harvey, ...
Journal of molecular biology 313 (1), 229-237, 2001
5802001
3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures
XJ Lu, WK Olson
Nature protocols 3 (7), 1213-1227, 2008
5242008
A-form conformational motifs in ligand-bound DNA structures
XJ Lu, Z Shakked, WK Olson
Journal of molecular biology 300 (4), 819-840, 2000
3702000
Web 3DNA—a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures
G Zheng, XJ Lu, WK Olson
Nucleic acids research 37 (suppl 2), W240-W246, 2009
2732009
Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster
C Moorman, LV Sun, J Wang, E De Wit, W Talhout, LD Ward, F Greil, ...
Proceedings of the National Academy of Sciences 103 (32), 12027-12032, 2006
2072006
DNA base-stacking interactions: a comparison of theoretical calculations with oligonucleotide X-ray crystal structures
CA Hunter, XJ Lu
Journal of molecular biology 265 (5), 603-619, 1997
1401997
DSSR: an integrated software tool for dissecting the spatial structure of RNA
XJ Lu, HJ Bussemaker, WK Olson
Nucleic acids research 43 (21), e142, 2015
1202015
Resolving the discrepancies among nucleic acid conformational analyses
XJ Lu, WK Olson
Journal of molecular biology 285 (4), 1563-1575, 1999
1101999
Structure and conformation of helical nucleic acids: analysis program (SCHNAaP)
XJ Lu, MA El Hassan, CA Hunter
Journal of molecular biology 273 (3), 668-680, 1997
931997
Bending of DNA by asymmetric charge neutralization: all-atom energy simulations
KM Kosikov, AA Gorin, XJ Lu, WK Olson, GS Manning
Journal of the American Chemical Society 124 (17), 4838-4847, 2002
702002
Structure and conformation of helical nucleic acids: rebuilding program (SCHNArP)
XJ Lu, MA El Hassan, CA Hunter
Journal of molecular biology 273 (3), 681-691, 1997
571997
Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression
A Boorsma, XJ Lu, A Zakrzewska, FM Klis, HJ Bussemaker
PLoS One 3 (9), e3112, 2008
522008
Overview of nucleic acid analysis programs
XJ Lu, MS Babcock, WK Olson
Journal of Biomolecular Structure and Dynamics 16 (4), 833-843, 1999
491999
Linking tumor cell cytotoxicity to mechanism of drug action: An integrated analysis of gene expression, small‐molecule screening and structural databases
DG Covell, A Wallqvist, R Huang, N Thanki, AA Rabow, XJ Lu
Proteins: Structure, Function, and Bioinformatics 59 (3), 403-433, 2005
462005
Protein-directed DNA structure. I. Raman spectroscopy of a high-mobility-group box with application to human sex reversal
JM Benevides, G Chan, XJ Lu, WK Olson, MA Weiss, GJ Thomas Jr
Biochemistry 39 (3), 537-547, 2000
452000
The RNA backbone plays a crucial role in mediating the intrinsic stability of the GpU dinucleotide platform and the GpUpA/GpA miniduplex
XJ Lu, WK Olson, HJ Bussemaker
Nucleic acids research 38 (14), 4868-4876, 2010
432010
Influence of fluorine on aromatic interactions
CA Hunter, XJ Lu, GM Kapteijn, G van Koten
J. Chem. Soc., Faraday Trans. 91 (13), 2009-2015, 1995
411995
Detecting transcriptionally active regions using genomic tiling arrays
G Halasz, MF van Batenburg, J Perusse, S Hua, XJ Lu, KP White, ...
Genome biology 7 (7), R59, 2006
372006
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Articles 1–20