Erik Lindahl

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Berk HessKTH Royal Institute of Technology, Stockholm, Sweden; Science for Life Laboratory, Stockholm, SwedenVerified email at scilifelab.se
David van der SpoelProfessor of Biology, Uppsala UniversityVerified email at xray.bmc.uu.se
Mark AbrahamVoxo ABVerified email at kth.se
Peter KassonAssociate Professor, University of Virginia and Uppsala UniversityVerified email at virginia.edu
Szilárd PállResearcher, PDC KTH Royal Institute of TechnologyVerified email at kth.se
Björn ForsbergKarolinska InstitutetVerified email at dbb.su.se
Pär BjelkmarPublic Health Agency of SwedenVerified email at folkhalsomyndigheten.se
Carsten KutznerMax Planck Institute for Multidisciplinary SciencesVerified email at gwdg.de
Roland SchulzIntelVerified email at rschulz.eu
Jeremy C SmithUniversity of Tennessee KnoxvilleVerified email at ornl.gov
Dari KimaniusPostdoc at MRC Laboratory of Molecular BiologyVerified email at mrc-lmb.cam.ac.uk
Per LarssonAssociate Professor, Uppsala UniversityVerified email at farmaci.uu.se
Rebecca J HowardResearcher, Stockholm UniversityVerified email at scilifelab.se
Rossen ApostolovResearcher, KTH Royal Institute of TechnologyVerified email at kth.se
Olle EdholmProfessor, theoretical physics, KTH Verified email at kth.se
Alan E. MarkProfessor of Biophysical Chemistry, University of QueenslandVerified email at uq.edu.au
Gerrit Groenhofprofessor of chemistry, University of JyväskyläVerified email at jyu.fi
Marc DelarueInstitut Pasteur/CNRS FranceVerified email at pasteur.fr
Arne ElofssonScience for Life Laboratory and department of Biochemistry and Biophysics, Stockholm UniversityVerified email at bioinfo.se
Samuel MurailAssitant professor, Université Paris CitéVerified email at univ-paris-diderot.fr

Erik Lindahl

Professor of Biophysics, Stockholm University & KTH, Science for Life Laboratory

Verified email at dbb.su.se - Homepage

Computational biophysics membrane proteins bioinformatics molecular simulation electrophysiology


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GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation B Hess, C Kutzner, D Van Der Spoel, E Lindahl Journal of chemical theory and computation 4 (3), 435-447, 2008	15554	2008
GROMACS: fast, flexible, and free D Van Der Spoel, E Lindahl, B Hess, G Groenhof, AE Mark, ... Journal of computational chemistry 26 (16), 1701-1718, 2005	14796	2005
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers MJ Abraham, T Murtola, R Schulz, S Páll, JC Smith, B Hess, E Lindahl SoftwareX 1, 19-25, 2015	13375	2015
GROMACS 3.0: a package for molecular simulation and trajectory analysis E Lindahl, B Hess, D Van Der Spoel Molecular modeling annual 7, 306-317, 2001	7583	2001
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit S Pronk, S Páll, R Schulz, P Larsson, P Bjelkmar, R Apostolov, MR Shirts, ... Bioinformatics 29 (7), 845-854, 2013	6713	2013
New tools for automated high-resolution cryo-EM structure determination in RELION-3 J Zivanov, T Nakane, BO Forsberg, D Kimanius, WJH Hagen, E Lindahl, ... elife 7, e42166, 2018	3176	2018
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2 D Kimanius, BO Forsberg, SHW Scheres, E Lindahl elife 5, e18722, 2016	932	2016
Implementation of the CHARMM force field in GROMACS: analysis of protein stability effects from correction maps, virtual interaction sites, and water models P Bjelkmar, P Larsson, MA Cuendet, B Hess, E Lindahl Journal of chemical theory and computation 6 (2), 459-466, 2010	896	2010
Tackling exascale software challenges in molecular dynamics simulations with GROMACS S Páll, MJ Abraham, C Kutzner, B Hess, E Lindahl Solving Software Challenges for Exascale: International Conference on …, 2015	868	2015
GROMACS user manual version 3.2 D van der Spoel, E Lindahl, B Hess, AR Van Buuren, E Apol, ... Nijenborgh 4, 9747, 2004	767	2004
Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations E Lindahl, O Edholm Biophysical journal 79 (1), 426-433, 2000	709	2000
Molecular dynamics simulations of phospholipid bilayers with cholesterol C Hofsäß, E Lindahl, O Edholm Biophysical journal 84 (4), 2192-2206, 2003	578	2003
the GROMACS development team MJ Abraham, D Van Der Spoel, E Lindahl, B Hess GROMACS user manual version 5 (4), 2016	552*	2016
Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION T Nakane, D Kimanius, E Lindahl, SHW Scheres elife 7, e36861, 2018	374	2018
NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis E Lindahl, C Azuara, P Koehl, M Delarue Nucleic acids research 34 (suppl_2), W52-W56, 2006	366	2006
Molecular recognition of a single sphingolipid species by a protein’s transmembrane domain FX Contreras, AM Ernst, P Haberkant, P Björkholm, E Lindahl, B Gönen, ... Nature 481 (7382), 525-529, 2012	363	2012
Membrane proteins: molecular dynamics simulations E Lindahl, MSP Sansom Current opinion in structural biology 18 (4), 425-431, 2008	353	2008
Prediction of membrane-protein topology from first principles A Bernsel, H Viklund, J Falk, E Lindahl, G Von Heijne, A Elofsson Proceedings of the National Academy of Sciences 105 (20), 7177-7181, 2008	344	2008
Simulation of the spontaneous aggregation of phospholipids into bilayers SJ Marrink, E Lindahl, O Edholm, AE Mark Journal of the American Chemical Society 123 (35), 8638-8639, 2001	337	2001
Spatial and energetic-entropic decomposition of surface tension in lipid bilayers from molecular dynamics simulations E Lindahl, O Edholm The Journal of chemical physics 113 (9), 3882-3893, 2000	294	2000

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