Erik Lindahl
Erik Lindahl
Professor of Biophysics, Science for Life Laboratory, Stockholm University
Verifierad e-postadress på scilifelab.se - Startsida
TitelCiteras avÅr
GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation
B Hess, C Kutzner, D Van Der Spoel, E Lindahl
Journal of chemical theory and computation 4 (3), 435-447, 2008
117862008
GROMACS: fast, flexible, and free
D Van Der Spoel, E Lindahl, B Hess, G Groenhof, AE Mark, ...
Journal of computational chemistry 26 (16), 1701-1718, 2005
93962005
GROMACS 3.0: a package for molecular simulation and trajectory analysis
E Lindahl, B Hess, D Van Der Spoel
Molecular modeling annual 7 (8), 306-317, 2001
63932001
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
S Pronk, S Páll, R Schulz, P Larsson, P Bjelkmar, R Apostolov, MR Shirts, ...
Bioinformatics 29 (7), 845-854, 2013
42242013
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
MJ Abraham, T Murtola, R Schulz, S Páll, JC Smith, B Hess, E Lindahl
SoftwareX 1, 19-25, 2015
33722015
Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations
E Lindahl, O Edholm
Biophysical journal 79 (1), 426-433, 2000
6262000
Implementation of the CHARMM force field in GROMACS: analysis of protein stability effects from correction maps, virtual interaction sites, and water models
P Bjelkmar, P Larsson, MA Cuendet, B Hess, E Lindahl
Journal of Chemical Theory and Computation 6 (2), 459-466, 2010
5152010
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2
D Kimanius, BO Forsberg, SHW Scheres, E Lindahl
Elife 5, e18722, 2016
5012016
Gromacs user manual version 4.0
D van der Spoel, E Lindahl, B Hess, AR Van Buuren, E Apol, ...
Nijenborgh 4, 9747, 2005
5012005
Molecular dynamics simulations of phospholipid bilayers with cholesterol
C Hofsäß, E Lindahl, O Edholm
Biophysical journal 84 (4), 2192-2206, 2003
4882003
Gromacs user manual version 3.2
D van der Spoel, E Lindahl, B Hess, AR Van Buuren, E Apol, ...
Nijenborgh 4, 9747, 2004
377*2004
Tackling exascale software challenges in molecular dynamics simulations with GROMACS
S Pall, MJ Abraham, C Kutzner, B Hess, E Lindahl
International Conference on Exascale Applications and Software, 3-27, 2014
319*2014
Simulation of the spontaneous aggregation of phospholipids into bilayers
SJ Marrink, E Lindahl, O Edholm, AE Mark
Journal of the American Chemical Society 123 (35), 8638-8639, 2001
3152001
NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis
E Lindahl, C Azuara, P Koehl, M Delarue
Nucleic acids research 34 (suppl_2), W52-W56, 2006
3142006
Membrane proteins: molecular dynamics simulations
E Lindahl, MSP Sansom
Current opinion in structural biology 18 (4), 425-431, 2008
2962008
Prediction of membrane-protein topology from first principles
A Bernsel, H Viklund, J Falk, E Lindahl, G von Heijne, A Elofsson
Proceedings of the National Academy of Sciences 105 (20), 7177-7181, 2008
2932008
New tools for automated high-resolution cryo-EM structure determination in RELION-3
J Zivanov, T Nakane, BO Forsberg, D Kimanius, WJH Hagen, E Lindahl, ...
Elife 7, e42166, 2018
2842018
Spatial and energetic-entropic decomposition of surface tension in lipid bilayers from molecular dynamics simulations
E Lindahl, O Edholm
The Journal of Chemical Physics 113 (9), 3882-3893, 2000
2672000
Molecular recognition of a single sphingolipid species by a protein’s transmembrane domain
FX Contreras, AM Ernst, P Haberkant, P Björkholm, E Lindahl, B Gönen, ...
Nature 481 (7382), 525, 2012
2472012
Identification of related proteins on family, superfamily and fold level
E Lindahl, A Elofsson
Journal of molecular biology 295 (3), 613-625, 2000
2152000
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Artiklar 1–20