Ben Murrell
Ben Murrell
Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet
Verifierad e-postadress på ki.se
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RDP4: Detection and analysis of recombination patterns in virus genomes
DP Martin, B Murrell, M Golden, A Khoosal, B Muhire
Virus evolution 1 (1), 2015
17972015
Detecting individual sites subject to episodic diversifying selection
B Murrell, JO Wertheim, S Moola, T Weighill, K Scheffler, SLK Pond
PLoS genet 8 (7), e1002764, 2012
1123*2012
FUBAR: a fast, unconstrained bayesian approximation for inferring selection
B Murrell, S Moola, A Mabona, T Weighill, D Sheward, ...
Molecular biology and evolution 30 (5), 1196-1205, 2013
7062013
A random effects branch-site model for detecting episodic diversifying selection
SL Kosakovsky Pond, B Murrell, M Fourment, SDW Frost, W Delport, ...
Molecular biology and evolution 28 (11), 3033-3043, 2011
4092011
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection
MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ...
Molecular biology and evolution 32 (5), 1342-1353, 2015
2952015
Antibody 10-1074 suppresses viremia in HIV-1-infected individuals
M Caskey, T Schoofs, H Gruell, A Settler, T Karagounis, EF Kreider, ...
Nature medicine 23 (2), 185-191, 2017
2872017
RELAX: detecting relaxed selection in a phylogenetic framework
JO Wertheim, B Murrell, MD Smith, SL Kosakovsky Pond, K Scheffler
Molecular biology and evolution 32 (3), 820-832, 2015
270*2015
Gene-wide identification of episodic selection
B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ...
Molecular biology and evolution 32 (5), 1365-1371, 2015
2492015
Broadly neutralizing antibody responses in a large longitudinal sub-Saharan HIV primary infection cohort
E Landais, X Huang, C Havenar-Daughton, B Murrell, MA Price, ...
PLoS pathogens 12 (1), e1005369, 2016
2082016
Social and genetic networks of HIV-1 transmission in New York City
JO Wertheim, SL Kosakovsky Pond, LA Forgione, SR Mehta, B Murrell, ...
PLoS pathogens 13 (1), e1006000, 2017
1272017
Early antibody lineage diversification and independent limb maturation lead to broad HIV-1 neutralization targeting the Env high-mannose patch
DT MacLeod, NM Choi, B Briney, F Garces, LS Ver, E Landais, B Murrell, ...
Immunity 44 (5), 1215-1226, 2016
1062016
Slow delivery immunization enhances HIV neutralizing antibody and germinal center responses via modulation of immunodominance
KM Cirelli, DG Carnathan, B Nogal, JT Martin, OL Rodriguez, ...
Cell 177 (5), 1153-1171. e28, 2019
1042019
An alpaca nanobody neutralizes SARS-CoV-2 by blocking receptor interaction
L Hanke, LV Perez, DJ Sheward, H Das, T Schulte, A Moliner-Morro, ...
Nature communications 11 (1), 1-9, 2020
1012020
SARS-CoV-2 exposure, symptoms and seroprevalence in healthcare workers in Sweden
AS Rudberg, S Havervall, A Månberg, AJ Falk, K Aguilera, H Ng, ...
Nature communications 11 (1), 1-8, 2020
972020
Vaccine-induced protection from homologous tier 2 SHIV challenge in nonhuman primates depends on serum-neutralizing antibody titers
MG Pauthner, JP Nkolola, C Havenar-Daughton, B Murrell, SM Reiss, ...
Immunity 50 (1), 241-252. e6, 2019
832019
Detecting and analyzing genetic recombination using RDP4
DP Martin, B Murrell, A Khoosal, B Muhire
Bioinformatics, 433-460, 2017
742017
HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies
SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ...
Molecular biology and evolution 37 (1), 295-299, 2020
692020
HIV envelope glycoform heterogeneity and localized diversity govern the initiation and maturation of a V2 apex broadly neutralizing antibody lineage
E Landais, B Murrell, B Briney, S Murrell, K Rantalainen, ZT Berndsen, ...
Immunity 47 (5), 990-1003. e9, 2017
652017
Deep sequencing reveals minor protease resistance mutations in patients failing a protease inhibitor regimen
R Fisher, GU van Zyl, SAA Travers, SL Kosakovsky Pond, S Engelbrech, ...
Journal of virology 86 (11), 6231-6237, 2012
582012
HIV transmission networks in the San Diego–Tijuana border region
SR Mehta, JO Wertheim, KC Brouwer, KD Wagner, A Chaillon, ...
EBioMedicine 2 (10), 1456-1463, 2015
502015
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Artiklar 1–20